Factsheet for TraesCS4A01G326000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G538900.1	Wheat	nucleus	48.78	58.29
TraesCS5D01G557100.1	Wheat	nucleus	52.86	51.59
GSMUA_Achr11P...	Banana	mitochondrion	9.59	44.34
Os03t0852300-01	Rice	plastid	26.94	43.56
HORVU5Hr1G123050.4	Barley	nucleus	36.33	41.88
KRH24892	Soybean	cytosol	5.51	33.75
Zm00001d034872_P001	Maize	nucleus	24.49	32.7
KXG37104	Sorghum	nucleus, plastid	26.53	29.95
CDX95106	Canola	nucleus	11.02	29.67
CDX93603	Canola	nucleus	10.41	28.81
Bra018668.1-P	Field mustard	nucleus	10.41	28.81
CDY06291	Canola	nucleus	10.41	28.18
Bra031606.1-P	Field mustard	nucleus, plastid	10.2	27.47
KRH24891	Soybean	nucleus	11.84	27.23
KRH29946	Soybean	nucleus	12.04	25.21
AT1G07980.1	Thale cress	nucleus, plastid	10.41	24.76
CDY22709	Canola	nucleus	8.98	24.18
VIT_06s0004g03030.t01	Wine grape	nucleus	18.78	21.65
Solyc06g016750.2.1	Tomato	nucleus	16.94	18.61
PGSC0003DMT400077500	Potato	nucleus	14.08	14.84

Protein Annotations

EnsemblPlants:TraesCS4A01G326000.1	EnsemblPlantsGene:TraesCS4A01G326000	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046982	InterPro:AT_hook_DNA-bd_motif	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold
InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	PFAM:PF00808	PRINTS:PR00929	SEG:seg
SMART:SM00384	SUPFAM:SSF47113	MapMan:15.5.50	:	:	:

Description

No Description!

Coordinates

chr4A:-:613401832..613406707

Molecular Weight (calculated)

50618.3 Da

IEP (calculated)

10.841

GRAVY (calculated)

-1.246

Length

490 amino acids

Sequence
(BLAST)

001: MAGKKSAAVS SVPSEGEESA VVPGSTAKRG PGRPKMDPVP AGASPGSTAK RGPGRPKKDP VPAAAGASPG STAKRGAGRP KKVAAPAESG KGSAPEPGKS
101: EMGEKGATPK KQGKGEKEKA KAATPKKKEK GDKAAAPEKK EKGDKAAAPE KKEKGDKAAA PEKKEKGDKA APPKKKGKGE KAAAPEKKEK GEKVATKKKE
201: KGEKGGKEKM GDTAATPKKK EKKGGEAAEP GSGSGKQEPS GEAGKPKPKP TPKKAKQQAS DGAAKETPSK RKRDDAGEPQ PQKSAKSAKK VDEATPTKKK
301: QASSGGAEKA TTPSKTPQKK EAKSAKKSPG KAEKATPTKK QQASGGPEKA TPSKRKHGDL ESPKAAKSGQ NGSSPAKKQK GKAAGAAPVA AEPGTCSFPM
401: ARVRLLMRDK DATIRSNNET VFLVNKASEL FLEVFAKDAH QNALKERKKS ITYENLSTAV CKEKRYKFLS DFVPLRVTAG DALKAVVKEP

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.