Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24892 | Soybean | cytosol | 28.17 | 75.0 |
| KRH29946 | Soybean | nucleus | 53.99 | 49.15 |
| GSMUA_Achr11P... | Banana | mitochondrion | 17.37 | 34.91 |
| Bra018668.1-P | Field mustard | nucleus | 27.7 | 33.33 |
| CDX93603 | Canola | nucleus | 27.7 | 33.33 |
| CDY06291 | Canola | nucleus | 28.17 | 33.15 |
| Bra031606.1-P | Field mustard | nucleus, plastid | 27.7 | 32.42 |
| CDX95106 | Canola | nucleus | 26.29 | 30.77 |
| CDY22709 | Canola | nucleus | 25.82 | 30.22 |
| AT1G07980.1 | Thale cress | nucleus, plastid | 25.35 | 26.21 |
| Os03t0852300-01 | Rice | plastid | 26.76 | 18.81 |
| VIT_06s0004g03030.t01 | Wine grape | nucleus | 35.21 | 17.65 |
| Zm00001d034872_P001 | Maize | nucleus | 27.7 | 16.08 |
| KXG37104 | Sorghum | nucleus, plastid | 28.17 | 13.82 |
| TraesCS5B01G538900.1 | Wheat | nucleus | 25.35 | 13.17 |
| Solyc06g016750.2.1 | Tomato | nucleus | 27.23 | 13.0 |
| HORVU5Hr1G123050.4 | Barley | nucleus | 24.41 | 12.24 |
| TraesCS4A01G326000.1 | Wheat | nucleus | 27.23 | 11.84 |
| TraesCS5D01G557100.1 | Wheat | nucleus | 26.29 | 11.16 |
| PGSC0003DMT400077500 | Potato | nucleus | 20.19 | 9.25 |
Protein Annotations
| EMBL:ACUP02007190 | EnsemblPlants:KRH24891 | EnsemblPlantsGene:GLYMA_12G069100 | EntrezGene:100500588 | Gene3D:1.10.20.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 |
| PANTHER:PTHR10252:SF54 | ProteinID:KRH24891 | ProteinID:KRH24891.1 | SEG:seg | SUPFAM:SSF47113 | UniParc:UPI00023D1066 |
| UniProt:I1LQX2 | MapMan:15.5.50 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:5065089..5066951
Molecular Weight (calculated)
23905.4 Da
IEP (calculated)
10.352
GRAVY (calculated)
-0.913
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSNTPKPE NKKSTKKSEI SKAEKKKTKN AEIPKTDGKT KKNKEISQEE NKKKIKKAKL SNGTSKQRDE GSKKGVAAEG NGEEAKMNVF PMNRIRTMIK
101: GEDPEMRVSQ EALFAINNTV VGFLFLASSS PLFRCLYPSS FSSFSLQEKF LEQFTQDAYA FCAQDRKKCL SYDHLAHVVS KQRRYDFLSD FVPERVKAED
201: ALRERSAAGK GGS
101: GEDPEMRVSQ EALFAINNTV VGFLFLASSS PLFRCLYPSS FSSFSLQEKF LEQFTQDAYA FCAQDRKKCL SYDHLAHVVS KQRRYDFLSD FVPERVKAED
201: ALRERSAAGK GGS
001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG
Arabidopsis Description
NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.