Factsheet for PGSC0003DMT400077500

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g016750.2.1	Tomato	nucleus	59.35	61.88
KRH24892	Soybean	cytosol	5.38	31.25
CDY22709	Canola	nucleus	9.46	24.18
AT1G07980.1	Thale cress	nucleus, plastid	10.54	23.79
Bra018668.1-P	Field mustard	nucleus	9.03	23.73
CDX93603	Canola	nucleus	9.03	23.73
Bra031606.1-P	Field mustard	nucleus, plastid	9.25	23.63
CDY06291	Canola	nucleus	9.03	23.2
CDX95106	Canola	nucleus	8.6	21.98
KRH29946	Soybean	nucleus	10.75	21.37
Os03t0852300-01	Rice	plastid	13.55	20.79
KRH24891	Soybean	nucleus	9.25	20.19
GSMUA_Achr11P...	Banana	mitochondrion	4.52	19.81
VIT_06s0004g03030.t01	Wine grape	nucleus	17.2	18.82
HORVU5Hr1G123050.4	Barley	nucleus	15.91	17.41
TraesCS5B01G538900.1	Wheat	nucleus	14.84	16.83
Zm00001d034872_P001	Maize	nucleus	12.04	15.26
TraesCS4A01G326000.1	Wheat	nucleus	14.84	14.08
TraesCS5D01G557100.1	Wheat	nucleus	14.62	13.55
KXG37104	Sorghum	nucleus, plastid	11.83	12.67

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.50	InterPro:CBFA_NFYB_domain	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	UniProt:M1CYH5	PFAM:PF00808	EnsemblPlantsGene:PGSC0003DMG401030137	PGSC:PGSC0003DMG401030137
EnsemblPlants:PGSC0003DMT400077500	PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	SUPFAM:SSF47113	UniParc:UPI0002953B69	SEG:seg

Description

Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_1 [Source:PGSC_GENE;Acc:PGSC0003DMG401030137]

Coordinates

chr6:-:9775603..9782857

Molecular Weight (calculated)

53296.3 Da

IEP (calculated)

9.333

GRAVY (calculated)

-1.444

Length

465 amino acids

Sequence
(BLAST)

001: MPKKSNGNSD NHDGDEPEDF VIPSSSAESQ DADETEEESD DVQNVHKEYV SDTDEEEEEE EEKVEGSKVA NTNSRGRKED LEVQKKVYRR KGKKIVGGSG
101: QSESENLKIY TRKKKMIEKE EEVEEKEQNV GAKMAKSKKD YREKNMKEKN EKAKKEDKMN EGKTAKNNGD SSRGGKNEKR NKKDERREVE GETKLAKKGK
201: SNGGSSHGGV IKKEENKKKK RTDEGEREGQ SAKKAKINGD LSQLKKEEKN MKKTQNKKEG DEEAEEKLVK KSYSNGVASP STKEKMKREK EKEGKTNNGK
301: VKDEAISNGT TKKNEEKKLK AKKKREDDEE EEEEKSESVL YQFPHNRVHR IIKNENADIR MLHEATFLVN KATEKFLEVF CREAYACSFL DRKSYVGYNH
401: LLAAEANPLN FYWKLAATAY QRRCDIAVFI LYIFKVDPRE VQSPPYKVIN KTLKLTCALS LKVHV

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.