CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06291	Canola	nucleus	87.91	88.4
CDX93603	Canola	nucleus	75.82	77.97
CDX95106	Canola	nucleus	70.33	70.33
AT1G07980.1	Thale cress	nucleus, plastid	70.33	62.14
GSMUA_Achr11P...	Banana	mitochondrion	21.43	36.79
KRH24892	Soybean	cytosol	15.93	36.25
KRH24891	Soybean	nucleus	30.22	25.82
KRH29946	Soybean	nucleus	30.22	23.5
Os03t0852300-01	Rice	plastid	27.47	16.5
VIT_06s0004g03030.t01	Wine grape	nucleus	31.32	13.41
HORVU5Hr1G123050.4	Barley	nucleus	27.47	11.76
TraesCS5B01G538900.1	Wheat	nucleus	26.37	11.71
Solyc06g016750.2.1	Tomato	nucleus	28.02	11.44
Zm00001d034872_P001	Maize	nucleus	21.98	10.9
KXG37104	Sorghum	nucleus, plastid	25.82	10.83
PGSC0003DMT400077500	Potato	nucleus	24.18	9.46
TraesCS5D01G557100.1	Wheat	nucleus	25.82	9.36
TraesCS4A01G326000.1	Wheat	nucleus	24.18	8.98

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.50	GO:A0A078GBI3	UniProt:A0A078GBI3	InterPro:CBFA_NFYB_domain	EnsemblPlants:CDY22709
ProteinID:CDY22709	ProteinID:CDY22709.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00019382001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	SUPFAM:SSF47113	UniParc:UPI0004EB2F36
SEG:seg	:	:	:	:	:

Description

BnaC08g43430DBnaC08g43430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBI3]

Coordinates

chrLK032134:+:594451..596059

Molecular Weight (calculated)

20413.9 Da

IEP (calculated)

9.393

GRAVY (calculated)

-1.004

Length

182 amino acids

Sequence
(BLAST)

001: MVSSKKPNQE KKPRSDGVNK AGGGNTRSSG SKPKKKNTNV QANAKKEPEV HEISESSSSD SAGEARRDEP VKSNGGGVED AKMIRFPMNR IRRILRSDNS
101: APQIMQDAVF LVNKATELFI ERFSEEAYES SVQDKKKFIH YKHLSSVVSN DERYEFLADC VREKLKADVA MEEWERSMTD AG

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.