CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034872_P001	Maize	nucleus	45.16	53.41
GSMUA_Achr11P...	Banana	mitochondrion	11.29	46.23
Os03t0852300-01	Rice	plastid	29.03	41.58
KRH24892	Soybean	cytosol	7.6	41.25
TraesCS5B01G538900.1	Wheat	nucleus	27.42	29.02
Bra018668.1-P	Field mustard	nucleus	11.52	28.25
KRH24891	Soybean	nucleus	13.82	28.17
KRH29946	Soybean	nucleus	14.98	27.78
CDX93603	Canola	nucleus	11.29	27.68
HORVU5Hr1G123050.4	Barley	nucleus	26.5	27.06
CDX95106	Canola	nucleus	11.29	26.92
Bra031606.1-P	Field mustard	nucleus, plastid	11.29	26.92
TraesCS4A01G326000.1	Wheat	nucleus	29.95	26.53
AT1G07980.1	Thale cress	nucleus, plastid	12.44	26.21
TraesCS5D01G557100.1	Wheat	nucleus	29.95	25.9
CDY22709	Canola	nucleus	10.83	25.82
CDY06291	Canola	nucleus	10.6	25.41
VIT_06s0004g03030.t01	Wine grape	nucleus	18.66	19.06
Solyc06g016750.2.1	Tomato	nucleus	14.75	14.35
PGSC0003DMT400077500	Potato	nucleus	12.67	11.83

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.50	UniProt:A0A1B6QGR2	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:KXG37104	ProteinID:KXG37104	ProteinID:KXG37104.1	PFAM:PF00808
PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	EnsemblPlantsGene:SORBI_3001G009200	SUPFAM:SSF47113	UniParc:UPI00081ACA98	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:848269..854834

Molecular Weight (calculated)

45843.2 Da

IEP (calculated)

11.383

GRAVY (calculated)

-1.263

Length

434 amino acids

Sequence
(BLAST)

001: MAGKKPTPVK PAAPSTQRNG SAAPGSKSRP KQASEEAAAA SAKAQSASKP RKITKEKPAA AKKKRDKPEP QVGGKRKKQQ ASADAATPAK KRKKGGEGPE
101: PKPQKEATPA KKHKPSGKPE KPATPGKKQK PAVKPATPAK KQQPAGKSPT PAKKQKPAGK PATPSKKQQS TGKPATPAKK QQSTGKPATP AKKQQSPGKA
201: ATPAKKQQSP GKAATPAKKQ QSPGKPATPA KKHQSPGRAE KPTPKKKHQS PGKAEKPTPK KQQSPGKARK PAAGATSLPK KQAKHEKPTP TKRKRGDDAP
301: QKEAKSPKRA PADGEVHAST PVKKKRKDQK AAAADMGVCS FPMARVRQLM RVEDATIRVS SDAVFLINKA SEFFLGKFAE DAYRNAVKDR KKSIIYDNLS
401: TAVCSQKGLK FLSEFVPQRV AAEDALKAMA GNNL

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.