Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93603 | Canola | nucleus | 98.31 | 98.31 |
| Bra031606.1-P | Field mustard | nucleus, plastid | 77.4 | 75.27 |
| AT1G07980.1 | Thale cress | nucleus, plastid | 67.23 | 57.77 |
| GSMUA_Achr11P... | Banana | mitochondrion | 23.73 | 39.62 |
| KRH24892 | Soybean | cytosol | 17.51 | 38.75 |
| KRH24891 | Soybean | nucleus | 33.33 | 27.7 |
| KRH29946 | Soybean | nucleus | 35.03 | 26.5 |
| Os03t0852300-01 | Rice | plastid | 33.9 | 19.8 |
| VIT_06s0004g03030.t01 | Wine grape | nucleus | 32.77 | 13.65 |
| Solyc06g016750.2.1 | Tomato | nucleus | 33.9 | 13.45 |
| HORVU5Hr1G123050.4 | Barley | nucleus | 31.64 | 13.18 |
| TraesCS5B01G538900.1 | Wheat | nucleus | 29.94 | 12.93 |
| Zm00001d034872_P001 | Maize | nucleus | 25.42 | 12.26 |
| KXG37104 | Sorghum | nucleus, plastid | 28.25 | 11.52 |
| TraesCS5D01G557100.1 | Wheat | nucleus | 31.07 | 10.96 |
| TraesCS4A01G326000.1 | Wheat | nucleus | 28.81 | 10.41 |
| PGSC0003DMT400077500 | Potato | nucleus | 23.73 | 9.03 |
Protein Annotations
| EnsemblPlants:Bra018668.1 | EnsemblPlants:Bra018668.1-P | EnsemblPlantsGene:Bra018668 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF54 | PFAM:PF00808 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI000253EE41 | UniProt:M4DQ75 | MapMan:15.5.50 | : |
Description
AT1G07980 (E=6e-047) NF-YC10 | NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10); transcription factor
Coordinates
chrA06:-:2708468..2709667
Molecular Weight (calculated)
20111.7 Da
IEP (calculated)
8.985
GRAVY (calculated)
-0.976
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSKKPNQE KKPKNGDGLN TRSSGSKTKK KTPNKAKLKD VAEKEPEVHE ISESSSSEGR RDEPKESNGV VVSEDAKMVR FPMNRIRRIM RSDNSAPQIM
101: QDAVFLVNKA TELFIERFSE EAYGSSVQDK KKFIHYKHLS SVVSNEERYE FLADCVPEKL KGEVALEEWE RSMTDVG
101: QDAVFLVNKA TELFIERFSE EAYGSSVQDK KKFIHYKHLS SVVSNEERYE FLADCVPEKL KGEVALEEWE RSMTDVG
001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG
Arabidopsis Description
NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.