Factsheet for TraesCS5B01G538900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G557100.1	Wheat	nucleus	66.1	53.98
TraesCS4A01G326000.1	Wheat	nucleus	58.29	48.78
GSMUA_Achr11P...	Banana	mitochondrion	12.2	47.17
HORVU5Hr1G123050.4	Barley	nucleus	42.44	40.94
Os03t0852300-01	Rice	plastid	28.54	38.61
Zm00001d034872_P001	Maize	nucleus	32.2	35.97
KRH24892	Soybean	cytosol	6.83	35.0
CDX95106	Canola	nucleus	13.41	30.22
CDX93603	Canola	nucleus	12.93	29.94
Bra018668.1-P	Field mustard	nucleus	12.93	29.94
CDY06291	Canola	nucleus	13.17	29.83
Bra031606.1-P	Field mustard	nucleus, plastid	13.17	29.67
KXG37104	Sorghum	nucleus, plastid	29.02	27.42
KRH29946	Soybean	nucleus	15.61	27.35
AT1G07980.1	Thale cress	nucleus, plastid	13.66	27.18
CDY22709	Canola	nucleus	11.71	26.37
KRH24891	Soybean	nucleus	13.17	25.35
VIT_06s0004g03030.t01	Wine grape	nucleus	20.24	19.53
Solyc06g016750.2.1	Tomato	nucleus	20.0	18.39
PGSC0003DMT400077500	Potato	nucleus	16.83	14.84

Protein Annotations

EnsemblPlants:TraesCS5B01G538900.1	EnsemblPlantsGene:TraesCS5B01G538900	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046982	InterPro:AT_hook_DNA-bd_motif	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold
InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	PFAM:PF00808	PRINTS:PR00929	SEG:seg
SUPFAM:SSF47113	MapMan:15.5.50	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:694156848..694161476

Molecular Weight (calculated)

42224.0 Da

IEP (calculated)

10.845

GRAVY (calculated)

-1.167

Length

410 amino acids

Sequence
(BLAST)

001: MAGKKQAAVS AAPSEGEEGA VVPSSTAKRG AGRPKKDPVP AAASPGSAAK RGPGKPKKDP VPAAAAKRGS GRPKKGAAPA ESGEGSAPEP GKSEMGEGEK
101: GATPKKQGKG EKEKAATPKK KKEKGDKPAN LEKKKKGDAA ATPKKKEKKG GEAAEPGSGS GKQEPSGEAG KPKPTPKKTK QQASDGAAKE TPSKRKRDDA
201: GEPQPQKAAK KADKATPTKK KQASSGGAEK ATTPSKTPQK EAKSAKKSPG KAEKATPTKK QQASGGAEKA TPSKRKHGDL ESPNAAKSGQ NGSSPAKKQK
301: GKAAGATPVA AEPGTCSFPM ARVRLLMRDK DATIRSNNEA VFLVNKASEL FLEVFAKDAH QNALKERKKS ITYENLSSAV CNEKRYKFLS DFVPLRVTAG
401: DALKAVAKEP

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.