Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | mitochondrion | 15.18 | 43.4 |
| KRH24892 | Soybean | cytosol | 10.56 | 40.0 |
| Zm00001d034872_P001 | Maize | nucleus | 41.25 | 34.06 |
| CDX93603 | Canola | nucleus | 19.8 | 33.9 |
| Bra018668.1-P | Field mustard | nucleus | 19.8 | 33.9 |
| CDY06291 | Canola | nucleus | 19.14 | 32.04 |
| CDX95106 | Canola | nucleus | 18.81 | 31.32 |
| Bra031606.1-P | Field mustard | nucleus, plastid | 18.81 | 31.32 |
| AT1G07980.1 | Thale cress | nucleus, plastid | 19.8 | 29.13 |
| KXG37104 | Sorghum | nucleus, plastid | 41.58 | 29.03 |
| TraesCS5B01G538900.1 | Wheat | nucleus | 38.61 | 28.54 |
| CDY22709 | Canola | nucleus | 16.5 | 27.47 |
| KRH29946 | Soybean | nucleus | 21.12 | 27.35 |
| TraesCS4A01G326000.1 | Wheat | nucleus | 43.56 | 26.94 |
| KRH24891 | Soybean | nucleus | 18.81 | 26.76 |
| HORVU5Hr1G123050.4 | Barley | nucleus | 37.29 | 26.59 |
| TraesCS5D01G557100.1 | Wheat | nucleus | 42.24 | 25.5 |
| VIT_06s0004g03030.t01 | Wine grape | nucleus | 25.08 | 17.88 |
| Solyc06g016750.2.1 | Tomato | nucleus | 23.1 | 15.7 |
| PGSC0003DMT400077500 | Potato | nucleus | 20.79 | 13.55 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.50 | EntrezGene:4334810 | ProteinID:ABF99940.1 | EMBL:AK103607 | ProteinID:BAF13836.1 |
| ProteinID:BAS87401.1 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| EnsemblPlantsGene:Os03g0852300 | EnsemblPlants:Os03t0852300-01 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF54 | UniProt:Q10AH3 |
| SUPFAM:SSF47113 | UniParc:UPI0000DB43DB | RefSeq:XP_015628750.1 | RefSeq:XP_015628751.1 | SEG:seg | : |
Description
DNA POLYMERASE II SUBUNIT B3-2Histone-fold domain containing protein. (Os03t0852300-01)
Coordinates
chr3:+:35890202..35894172
Molecular Weight (calculated)
32857.0 Da
IEP (calculated)
11.119
GRAVY (calculated)
-1.334
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKKKALTN PASPSASASA STPKKSTATS KDRSTPKPRK NPNPKEEAPP PPPANNKRLN PQGGSNRKKK ADAGTPSKKP KRQPPEPKPR KHKGAKSEKP
101: HRVSGEGEKP TPTKKKKKKE SSKEPKREKQ QASAPMSTPS KKNKEAKRDT GGAGKPTPTK RKLGDVDPPQ ERPSGEGQAS SPTPAKKRKD KAAAAEAVAD
201: HGAGSFPMAR VRQIMRAEDA TIRPSNEAVF LINKATEIFL KRFADDAYRN ALKDRKKSIV YDNLSTAVCN QKRYKFLSDF VPQKVTAEDA LKAPVSSQVN
301: QPQ
101: HRVSGEGEKP TPTKKKKKKE SSKEPKREKQ QASAPMSTPS KKNKEAKRDT GGAGKPTPTK RKLGDVDPPQ ERPSGEGQAS SPTPAKKRKD KAAAAEAVAD
201: HGAGSFPMAR VRQIMRAEDA TIRPSNEAVF LINKATEIFL KRFADDAYRN ALKDRKKSIV YDNLSTAVCN QKRYKFLSDF VPQKVTAEDA LKAPVSSQVN
301: QPQ
001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG
Arabidopsis Description
NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.