Factsheet for Zm00001d034872_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	13.08	45.28
KXG37104	Sorghum	nucleus, plastid	53.41	45.16
KRH24892	Soybean	cytosol	9.26	42.5
Os03t0852300-01	Rice	plastid	34.06	41.25
TraesCS5B01G538900.1	Wheat	nucleus	35.97	32.2
KRH29946	Soybean	nucleus	18.8	29.49
KRH24891	Soybean	nucleus	16.08	27.7
HORVU5Hr1G123050.4	Barley	nucleus	29.7	25.65
Bra018668.1-P	Field mustard	nucleus	12.26	25.42
CDX93603	Canola	nucleus	12.26	25.42
TraesCS5D01G557100.1	Wheat	nucleus	34.06	24.9
CDY06291	Canola	nucleus	12.26	24.86
AT1G07980.1	Thale cress	nucleus, plastid	13.9	24.76
CDX95106	Canola	nucleus	12.26	24.73
TraesCS4A01G326000.1	Wheat	nucleus	32.7	24.49
Bra031606.1-P	Field mustard	nucleus, plastid	11.99	24.18
CDY22709	Canola	nucleus	10.9	21.98
VIT_06s0004g03030.t01	Wine grape	nucleus	20.98	18.12
Solyc06g016750.2.1	Tomato	nucleus	18.53	15.25
PGSC0003DMT400077500	Potato	nucleus	15.26	12.04

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:103644329	MapMan:15.5.50	UniProt:A0A096R9U6	InterPro:CBFA_NFYB_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	ProteinID:ONM11657.1	ProteinID:ONM11658.1	PFAM:PF00808
PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	SUPFAM:SSF47113	UniParc:UPI000220E389	EnsemblPlantsGene:Zm00001d034872	EnsemblPlants:Zm00001d034872_P001
EnsemblPlants:Zm00001d034872_T001	SEG:seg	:	:	:	:

Description

CCAAT-HAP5-transcription factor 54nuclear factor Y subunit C10

Coordinates

chr1:-:304416011..304432351

Molecular Weight (calculated)

39343.2 Da

IEP (calculated)

11.293

GRAVY (calculated)

-1.305

Length

367 amino acids

Sequence
(BLAST)

001: MAGKKTTPAK PAPSSTQRNG SAVPGSKSRP KQASEEAAAA SAKAQSPSKP RKITKEKPAA AKKKREKTEP QEGGKRRKQQ VLADAATPSK KRKKGGEGPE
101: PKEATPAKKH KPAGTPPKKQ KAPSKPATPA KKQQSPGKAE KLTPKKKQQS PGKAEKPTPK KKQQSPGKAE KPTPKKKQQS PGKAEKAAPK KQQQQPAGKA
201: RKPAAAATSP TKKKQAKREK PTPTKRKRGD DEQAKEAKSP KRAPADGAAR ASTPVKKKLK DQKAAAANMG VCSFSMARVR QLMRAEDPTI RPSSEAVFLI
301: NKASEFFLGK FAEDAYHNAA KDRKKSIIYD NLSTAVSSQK TLKFLSDFVP QRVAAEDALK AMTSNNS

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.