Factsheet for HORVU5Hr1G123050.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	10.82	43.4
TraesCS5B01G538900.1	Wheat	nucleus	40.94	42.44
TraesCS5D01G557100.1	Wheat	nucleus	46.82	39.64
KRH24892	Soybean	cytosol	7.06	37.5
Os03t0852300-01	Rice	plastid	26.59	37.29
TraesCS4A01G326000.1	Wheat	nucleus	41.88	36.33
Bra018668.1-P	Field mustard	nucleus	13.18	31.64
CDX93603	Canola	nucleus	12.94	31.07
CDX95106	Canola	nucleus	12.94	30.22
CDY06291	Canola	nucleus	12.71	29.83
Zm00001d034872_P001	Maize	nucleus	25.65	29.7
Bra031606.1-P	Field mustard	nucleus, plastid	12.71	29.67
CDY22709	Canola	nucleus	11.76	27.47
AT1G07980.1	Thale cress	nucleus, plastid	12.94	26.7
KXG37104	Sorghum	nucleus, plastid	27.06	26.5
KRH29946	Soybean	nucleus	13.88	25.21
KRH24891	Soybean	nucleus	12.24	24.41
VIT_06s0004g03030.t01	Wine grape	nucleus	20.0	20.0
Solyc06g016750.2.1	Tomato	nucleus	18.35	17.49
PGSC0003DMT400077500	Potato	nucleus	17.41	15.91

Protein Annotations

EnsemblPlants:HORVU5Hr1G123050.4	EnsemblPlantsGene:HORVU5Hr1G123050	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:CBFA_NFYB_domain
InterPro:Histone-fold	InterPro:IPR009072	ncoils:Coil	PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI000B4657CF	UniProt:A0A287T0F5	MapMan:15.5.50	:

Description

No Description!

Coordinates

chrchr5H:+:663423172..663428586

Molecular Weight (calculated)

45593.7 Da

IEP (calculated)

10.552

GRAVY (calculated)

-1.199

Length

425 amino acids

Sequence
(BLAST)

001: MAGKKSAAVT PAPSDGEESA VVPSSAAKRQ SGRHKKDPAA ASLGSTAKRV AGRPKKVAGP AESGEGSAMN PAKGDMGDEE KGATPKKKEK GATPKKGEKA
101: ATPKKTEKKG EKAATPEKTE KKGEKAATPK KAEKKGEKAA TPKKTEKKEK AATPEKTEKK GEKAATPKKA EKKGEKAATP KKTEKKGEKA AIPKEEKAAT
201: PKKEEEEKAT APKKKEKGEK AAAKKKKDKG EIAASLDKEE MGDTLANLKK KKEEEEMGDT LANLKKKKEK EEMGDTLANM KKKKKEKEEM GDTLANMRKR
301: KHGDLESPKA AKKHKGKAAG AAPAATEPGT CSFPMARVRV LMRDKDATIR SNTETVFLVN KASELFLEAF VEDAYQNALK GRKKSIAYDN LSAGVCNEKR
401: YKFLSDFVPL RVTAGDALKA VVERS

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.