Factsheet for VIT_06s0004g03030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24892	Soybean	cytosol	9.41	50.0
GSMUA_Achr11P...	Banana	mitochondrion	9.88	39.62
KRH24891	Soybean	nucleus	17.65	35.21
Bra031606.1-P	Field mustard	nucleus, plastid	14.35	33.52
KRH29946	Soybean	nucleus	18.35	33.33
Bra018668.1-P	Field mustard	nucleus	13.65	32.77
CDX93603	Canola	nucleus	13.65	32.77
CDY06291	Canola	nucleus	13.65	32.04
CDY22709	Canola	nucleus	13.41	31.32
CDX95106	Canola	nucleus	12.94	30.22
AT1G07980.1	Thale cress	nucleus, plastid	14.12	29.13
Os03t0852300-01	Rice	plastid	17.88	25.08
Solyc06g016750.2.1	Tomato	nucleus	22.35	21.3
Zm00001d034872_P001	Maize	nucleus	18.12	20.98
TraesCS5B01G538900.1	Wheat	nucleus	19.53	20.24
HORVU5Hr1G123050.4	Barley	nucleus	20.0	20.0
TraesCS4A01G326000.1	Wheat	nucleus	21.65	18.78
KXG37104	Sorghum	nucleus, plastid	19.06	18.66
PGSC0003DMT400077500	Potato	nucleus	18.82	17.2
TraesCS5D01G557100.1	Wheat	nucleus	19.06	16.14

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100243337	wikigene:100243337	MapMan:15.5.50	InterPro:CBFA_NFYB_domain	ProteinID:CBI16296
ProteinID:CBI16296.3	ncoils:Coil	UniProt:D7SKW8	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100243337	wikigene:LOC100243337	PFAM:PF00808	PANTHER:PTHR10252
PANTHER:PTHR10252:SF54	SUPFAM:SSF47113	UniParc:UPI0001983767	ArrayExpress:VIT_06s0004g03030	EnsemblPlantsGene:VIT_06s0004g03030	EnsemblPlants:VIT_06s0004g03030.t01
unigene:Vvi.15167	RefSeq:XP_002282257	RefSeq:XP_002282257.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:3784925..3793443

Molecular Weight (calculated)

47622.7 Da

IEP (calculated)

10.475

GRAVY (calculated)

-1.473

Length

425 amino acids

Sequence
(BLAST)

001: MPTSVSEFEL ELGEMRSRRL IEKPSGRRKG KQLSISKINH ELSEIVTIPS SSSDDEANTT SLHQKADETL LHQKKKKKEP KVETKKKTGA KVETKKKTGA
101: KVETKKKTGA KVETKKKKEE KEDESAAHLK KRKNKGEESV AHKKKKLKKE AGKGSLGQKN EKGEGESVAP KKKNGKGQEE SKGTLKKKRK KEDEEEGVTL
201: PKAKGKGKGE EENKGSMKKK KKEEEDTGGV VNQKKKGKGE GESSKANLKK KKKKGEGEGR EGAATQKENQ KKAGEEVTPA HLEINDKKNE KKKKKENKGN
301: EEEKLANLKS NEKKNEKDEE KKKKGGAHCG YNFPMSRIER IVRSDCDDVR ISQEALFLIN KASEEFLQQF VNDAYACSVK DRKNYVSYKH IASAVSKCKR
401: FDFLSDFVPE RVSAEKALAE RSAKT

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.