Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20167 | Canola | nucleus | 83.23 | 84.81 |
| CDY21888 | Canola | nucleus | 82.61 | 84.71 |
| Bra021147.1-P | Field mustard | nucleus | 81.99 | 84.08 |
| CDY30123 | Canola | nucleus | 84.47 | 82.42 |
| Bra027199.1-P | Field mustard | nucleus | 85.09 | 80.59 |
| CDX82424 | Canola | nucleus | 85.09 | 72.49 |
| CDX75855 | Canola | nucleus | 83.23 | 72.04 |
| Bra001615.1-P | Field mustard | nucleus | 81.99 | 69.84 |
| Solyc12g006120.1.1 | Tomato | nucleus | 78.26 | 62.38 |
| PGSC0003DMT400010977 | Potato | nucleus | 74.53 | 59.11 |
| AT5G47640.1 | Thale cress | nucleus | 66.46 | 56.32 |
| AT2G38880.8 | Thale cress | nucleus | 55.28 | 54.27 |
| AT2G37060.2 | Thale cress | nucleus | 57.76 | 53.76 |
| AT3G53340.5 | Thale cress | nucleus | 54.66 | 50.0 |
| AT2G47810.1 | Thale cress | nucleus | 45.96 | 46.25 |
| AT1G09030.1 | Thale cress | nucleus | 39.75 | 46.04 |
| VIT_12s0057g01010.t01 | Wine grape | nucleus | 78.26 | 43.15 |
| AT2G13570.1 | Thale cress | nucleus | 55.9 | 41.86 |
| AT5G47670.3 | Thale cress | nucleus | 44.1 | 30.34 |
| AT1G21970.1 | Thale cress | nucleus | 42.24 | 28.57 |
| AT5G08190.1 | Thale cress | cytosol, nucleus, plastid | 24.22 | 23.93 |
| AT5G23090.1 | Thale cress | cytosol, nucleus, plastid | 22.98 | 23.27 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EntrezGene:827101 | UniProt:A0A178V2P3 | ProteinID:AEE83458.1 | EMBL:AK117818 |
| ArrayExpress:AT4G14540 | EnsemblPlantsGene:AT4G14540 | RefSeq:AT4G14540 | TAIR:AT4G14540 | RefSeq:AT4G14540-TAIR-G | EnsemblPlants:AT4G14540.1 |
| TAIR:AT4G14540.1 | EMBL:BT003684 | ProteinID:CAB10233.1 | ProteinID:CAB78496.1 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:IPR009072 | Symbol:NF-YB3 | RefSeq:NP_193190.1 | UniProt:O23310 | ProteinID:OAO99322.1 |
| PFAM:PF00808 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF87 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS |
| UniParc:UPI000000C100 | SEG:seg | : | : | : | : |
Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
Coordinates
chr4:+:8344349..8345324
Molecular Weight (calculated)
17187.0 Da
IEP (calculated)
6.117
GRAVY (calculated)
-0.720
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.