Factsheet for AT5G47640.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28916	Canola	nucleus	92.11	94.09
Bra022147.1-P	Field mustard	nucleus	91.58	93.55
CDY25955	Canola	nucleus	91.58	93.05
CDY40552	Canola	nucleus	90.53	92.97
CDY41061	Canola	nucleus	90.0	92.93
Bra017473.1-P	Field mustard	nucleus	90.0	92.93
AT4G14540.1	Thale cress	nucleus	56.32	66.46
AT2G37060.2	Thale cress	nucleus	49.47	54.34
AT2G38880.8	Thale cress	nucleus	46.84	54.27
AT3G53340.5	Thale cress	nucleus	50.0	53.98
AT2G47810.1	Thale cress	nucleus	40.0	47.5
AT1G09030.1	Thale cress	nucleus	34.21	46.76
AT2G13570.1	Thale cress	nucleus	48.42	42.79
AT5G47670.3	Thale cress	nucleus	40.0	32.48
AT1G21970.1	Thale cress	nucleus	39.47	31.51
AT5G23090.1	Thale cress	cytosol, nucleus, plastid	21.58	25.79
AT5G08190.1	Thale cress	cytosol, nucleus, plastid	21.05	24.54

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:834815	UniProt:A0A178UPH7	ProteinID:AED95545.1	EMBL:AF250338
EMBL:AF385744	ArrayExpress:AT5G47640	EnsemblPlantsGene:AT5G47640	RefSeq:AT5G47640	TAIR:AT5G47640	RefSeq:AT5G47640-TAIR-G
EnsemblPlants:AT5G47640.1	TAIR:AT5G47640.1	EMBL:AY078026	Unigene:At.21494	ProteinID:BAB09090.1	InterPro:CBFA_NFYB_domain
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003712
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982
GO:GO:0048574	InterPro:Histone-fold	InterPro:IPR009072	Symbol:NF-YB2	RefSeq:NP_199575.1	ProteinID:OAO95565.1
PFAM:PF00808	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF87	UniProt:Q9FGJ3
SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00000A24AE	EMBL:Y13724	SEG:seg	:

Description

NFYB2Nuclear transcription factor Y subunit B-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGJ3]

Coordinates

chr5:+:19309227..19310272

Molecular Weight (calculated)

20530.7 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.906

Length

190 amino acids

Sequence
(BLAST)

001: MGDSDRDSGG GQNGNNQNGQ SSLSPREQDR FLPIANVSRI MKKALPANAK ISKDAKETMQ ECVSEFISFV TGEASDKCQK EKRKTINGDD LLWAMTTLGF
101: EDYVEPLKVY LQRFREIEGE RTGLGRPQTG GEVGEHQRDA VGDGGGFYGG GGGMQYHQHH QFLHQQNHMY GATGGGSDSG GGAASGRTRT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.