Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00411 | Canola | nucleus | 77.31 | 80.0 |
| Bra012301.1-P | Field mustard | nucleus | 66.39 | 79.0 |
| CDY01304 | Canola | nucleus | 76.47 | 78.79 |
| Bra031356.1-P | Field mustard | nucleus | 68.49 | 76.17 |
| KRG89094 | Soybean | cytosol | 39.5 | 55.95 |
| KRH66068 | Soybean | nucleus | 40.34 | 55.17 |
| CDY68650 | Canola | nucleus | 67.23 | 53.33 |
| CDY30639 | Canola | nucleus | 73.95 | 51.46 |
| AT5G47670.3 | Thale cress | nucleus | 42.86 | 43.59 |
| AT1G09030.1 | Thale cress | nucleus | 24.79 | 42.45 |
| AT4G14540.1 | Thale cress | nucleus | 28.57 | 42.24 |
| Os02t0725700-01 | Rice | nucleus | 43.7 | 40.94 |
| Zm00001d051697_P001 | Maize | nucleus | 45.38 | 40.91 |
| AT3G53340.5 | Thale cress | nucleus | 29.83 | 40.34 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 40.76 | 40.08 |
| AT2G37060.2 | Thale cress | nucleus | 28.99 | 39.88 |
| AT5G47640.1 | Thale cress | nucleus | 31.51 | 39.47 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 40.76 | 39.43 |
| TraesCS6B01G316600.1 | Wheat | nucleus | 40.76 | 39.43 |
| TraesCS6D01G268000.1 | Wheat | nucleus | 40.76 | 39.43 |
| Zm00001d017898_P001 | Maize | nucleus | 45.8 | 39.21 |
| KXG30848 | Sorghum | nucleus | 45.38 | 39.13 |
| AT2G38880.8 | Thale cress | nucleus | 26.89 | 39.02 |
| AT2G47810.1 | Thale cress | nucleus | 24.37 | 36.25 |
| AT2G13570.1 | Thale cress | nucleus | 28.57 | 31.63 |
| AT5G08190.1 | Thale cress | cytosol, nucleus, plastid | 14.29 | 20.86 |
| AT5G23090.1 | Thale cress | cytosol, nucleus, plastid | 13.87 | 20.75 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EntrezGene:838800 | ProteinID:AAC39488.1 | ProteinID:AAF16537.1 | EMBL:AB493474 |
| ProteinID:AEE30179.1 | ArrayExpress:AT1G21970 | EnsemblPlantsGene:AT1G21970 | RefSeq:AT1G21970 | TAIR:AT1G21970 | RefSeq:AT1G21970-TAIR-G |
| EnsemblPlants:AT1G21970.1 | TAIR:AT1G21970.1 | Unigene:At.28011 | EMBL:BX817269 | InterPro:CBFA_NFYB_domain | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006629 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009785 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0010262 | GO:GO:0043565 |
| GO:GO:0045723 | GO:GO:0045893 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | Symbol:LEC1 |
| RefSeq:NP_173616.2 | PFAM:PF00808 | PO:PO:0000011 | PO:PO:0001078 | PO:PO:0001180 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0009010 | PO:PO:0009089 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF79 | UniProt:Q9SFD8 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000034F3C1 | SEG:seg |
Description
NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
Coordinates
chr1:-:7727577..7729649
Molecular Weight (calculated)
26071.5 Da
IEP (calculated)
5.942
GRAVY (calculated)
-0.638
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.