Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006991.1-P | Field mustard | nucleus | 85.8 | 84.83 |
| AT2G37060.2 | Thale cress | nucleus | 81.82 | 83.24 |
| PGSC0003DMT400004366 | Potato | nucleus | 58.52 | 73.57 |
| Solyc09g007290.2.1 | Tomato | nucleus | 52.27 | 71.32 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 64.77 | 70.81 |
| CDX73560 | Canola | nucleus | 86.36 | 66.38 |
| KXG22176 | Sorghum | nucleus | 63.64 | 62.22 |
| Zm00001d038397_P005 | Maize | nucleus | 62.5 | 61.8 |
| Os05t0463800-02 | Rice | nucleus | 63.07 | 60.0 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 38.64 | 59.65 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 64.77 | 58.76 |
| CDX78169 | Canola | nucleus | 85.8 | 58.75 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 35.23 | 58.49 |
| Zm00001d010574_P001 | Maize | nucleus | 61.93 | 58.29 |
| AT2G38880.8 | Thale cress | nucleus | 53.41 | 57.32 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 58.52 | 56.59 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 39.2 | 56.56 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 57.95 | 56.04 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 57.95 | 56.04 |
| AT4G14540.1 | Thale cress | nucleus | 50.0 | 54.66 |
| AT5G47640.1 | Thale cress | nucleus | 53.98 | 50.0 |
| AT2G47810.1 | Thale cress | nucleus | 43.18 | 47.5 |
| AT1G09030.1 | Thale cress | nucleus | 33.52 | 42.45 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 57.95 | 40.48 |
| AT2G13570.1 | Thale cress | nucleus | 48.3 | 39.53 |
| AT5G47670.3 | Thale cress | nucleus | 40.34 | 30.34 |
| AT1G21970.1 | Thale cress | nucleus | 40.34 | 29.83 |
| AT5G23090.1 | Thale cress | cytosol, nucleus, plastid | 21.59 | 23.9 |
| AT5G08190.1 | Thale cress | cytosol, nucleus, plastid | 19.89 | 21.47 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EntrezGene:824502 | UniProt:A0A178VNV1 | ProteinID:AEE79070.1 | EMBL:AK176827 |
| ProteinID:ANM65605.1 | ArrayExpress:AT3G53340 | EnsemblPlantsGene:AT3G53340 | RefSeq:AT3G53340 | TAIR:AT3G53340 | RefSeq:AT3G53340-TAIR-G |
| EnsemblPlants:AT3G53340.5 | Unigene:At.35203 | ProteinID:CAB67641.1 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019748 | GO:GO:0019760 | GO:GO:0043565 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | Symbol:NF-YB10 | RefSeq:NP_001327562.1 | RefSeq:NP_190902.2 |
| ProteinID:OAP06865.1 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF85 |
| UniProt:Q67XJ2 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000042BC87 | SEG:seg | : |
Description
NFYB10Nuclear transcription factor Y subunit B-10 [Source:UniProtKB/Swiss-Prot;Acc:Q67XJ2]
Coordinates
chr3:-:19774327..19776280
Molecular Weight (calculated)
19156.5 Da
IEP (calculated)
5.344
GRAVY (calculated)
-0.808
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESQTGGGG GGSHESGGDQ SPRSLNVREQ DRFLPIANIS RIMKRGLPLN GKIAKDAKET MQECVSEFIS FVTSEASDKC QREKRKTING DDLLWAMATL
101: GFEDYIDPLK VYLMRYREME GDTKGSGKGG ESSAKRDGQP SQVSQFSQVP QQGSFSQGPY GNSQGSNMMV QMPGTE
101: GFEDYIDPLK VYLMRYREME GDTKGSGKGG ESSAKRDGQP SQVSQFSQVP QQGSFSQGPY GNSQGSNMMV QMPGTE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.