Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038397_P005 | Maize | nucleus | 87.7 | 92.13 |
| KXG22176 | Sorghum | nucleus | 88.24 | 91.67 |
| Os05t0463800-02 | Rice | nucleus | 83.96 | 84.86 |
| VIT_06s0004g03490.t01 | Wine grape | nucleus | 59.89 | 84.21 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 78.07 | 80.22 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 78.07 | 80.22 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 77.54 | 79.67 |
| PGSC0003DMT400004366 | Potato | nucleus | 57.75 | 77.14 |
| CDX74880 | Canola | nucleus | 56.15 | 73.94 |
| KRH32395 | Soybean | nucleus | 63.1 | 73.75 |
| Bra005074.1-P | Field mustard | nucleus | 55.62 | 73.24 |
| Solyc04g009520.2.1 | Tomato | nucleus | 33.16 | 72.09 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 62.03 | 72.05 |
| PGSC0003DMT400082465 | Potato | nucleus | 49.73 | 70.45 |
| Solyc09g007290.2.1 | Tomato | nucleus | 47.59 | 68.99 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 71.12 | 68.56 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 63.64 | 67.61 |
| Zm00001d042968_P002 | Maize | extracellular, nucleus | 68.45 | 67.37 |
| Solyc04g049910.2.1 | Tomato | nucleus | 58.29 | 66.06 |
| AT2G37060.2 | Thale cress | nucleus | 59.89 | 64.74 |
| AT2G38880.8 | Thale cress | nucleus | 55.62 | 63.41 |
| AT3G53340.5 | Thale cress | nucleus | 58.29 | 61.93 |
| Bra006991.1-P | Field mustard | nucleus | 58.82 | 61.8 |
| CDY18462 | Canola | nucleus | 57.22 | 61.14 |
| CDY07691 | Canola | nucleus | 52.94 | 59.64 |
| Zm00001d001775_P001 | Maize | nucleus | 28.88 | 59.34 |
| Zm00001d009636_P001 | Maize | nucleus | 40.11 | 58.14 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 77.01 | 57.14 |
| Bra017209.1-P | Field mustard | nucleus | 57.75 | 56.54 |
| Bra023095.1-P | Field mustard | nucleus | 60.43 | 56.5 |
| CDY72254 | Canola | nucleus | 55.62 | 55.91 |
| CDY18460 | Canola | nucleus | 57.75 | 55.67 |
| CDY14422 | Canola | nucleus | 48.66 | 55.49 |
| CDX91501 | Canola | nucleus | 57.75 | 50.94 |
| CDX79714 | Canola | nucleus | 59.36 | 50.0 |
| Zm00001d039957_P001 | Maize | nucleus | 36.9 | 50.0 |
| CDX73560 | Canola | nucleus | 58.82 | 48.03 |
| Zm00001d006813_P001 | Maize | nucleus | 50.27 | 45.85 |
| Zm00001d022099_P001 | Maize | nucleus | 51.87 | 45.75 |
| Zm00001d029505_P001 | Maize | nucleus | 51.34 | 43.24 |
| CDX78169 | Canola | nucleus | 58.82 | 42.8 |
| CDY46752 | Canola | nucleus | 60.43 | 42.32 |
| Zm00001d011915_P001 | Maize | nucleus | 37.43 | 40.94 |
| Zm00001d030151_P001 | Maize | mitochondrion | 17.65 | 40.24 |
| Zm00001d042196_P001 | Maize | nucleus | 38.5 | 40.22 |
| Zm00001d042197_P001 | Maize | plastid | 29.95 | 33.73 |
| Zm00001d049485_P001 | Maize | nucleus | 45.99 | 33.2 |
| Zm00001d051697_P001 | Maize | nucleus | 37.97 | 26.89 |
| Zm00001d017898_P001 | Maize | nucleus | 38.5 | 25.9 |
| Zm00001d045772_P001 | Maize | nucleus, plastid | 31.02 | 22.14 |
| Zm00001d017899_P001 | Maize | nucleus | 20.86 | 19.8 |
| Zm00001d019101_P001 | Maize | nucleus | 20.32 | 19.29 |
| Zm00001d012445_P001 | Maize | nucleus | 45.99 | 16.29 |
| Zm00001d050242_P002 | Maize | plastid | 21.93 | 13.8 |
| Zm00001d032328_P005 | Maize | extracellular, plastid | 21.93 | 13.62 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | UniProt:A0A1D6FS52 | ProteinID:AQK94389.1 | ProteinID:AQK94390.1 | InterPro:CBFA_NFYB_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF37 |
| SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0008433FFF | EnsemblPlantsGene:Zm00001d010574 | EnsemblPlants:Zm00001d010574_P001 | EnsemblPlants:Zm00001d010574_T001 |
| SEG:seg | : | : | : | : | : |
Description
CCAAT-DR1-transcription factor 15Nuclear transcription factor Y subunit B-8
Coordinates
chr8:+:120713490..120716661
Molecular Weight (calculated)
19829.4 Da
IEP (calculated)
8.449
GRAVY (calculated)
-0.487
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAPASPGG GGGSHESGSP RGGGGGGGGS VREQDRFLPI ANISRIMKKA IPANGKIAKD AKETVQECVS EFISFITSEA SDKCQREKRK TINGDDLLWA
101: MATLGFEDYI EPLKVYLQKY REGDSKLTSK SSDGSIKKDA LGHVGASSSA VQGMGQQGTY NQGMGYMQPQ ISTLIYCKFA NQFTAFA
101: MATLGFEDYI EPLKVYLQKY REGDSKLTSK SSDGSIKKDA LGHVGASSSA VQGMGQQGTY NQGMGYMQPQ ISTLIYCKFA NQFTAFA
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE GDNKGSGKSG DGSNRDAGGG VSGEEMPSW
101: LKIYLARYRE GDNKGSGKSG DGSNRDAGGG VSGEEMPSW
Arabidopsis Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.