Factsheet for Zm00001d039957_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001775_P001	Maize	nucleus	59.42	90.11
Zm00001d009636_P001	Maize	nucleus	76.09	81.4
OQU78466	Sorghum	nucleus	68.12	68.61
HORVU5Hr1G004870.1	Barley	nucleus	53.62	63.79
HORVU7Hr1G119940.1	Barley	nucleus	58.7	62.79
TraesCS1B01G442000.1	Wheat	nucleus	61.59	62.5
TraesCS1D01G419500.1	Wheat	nucleus	61.59	62.5
HORVU3Hr1G047250.1	Barley	nucleus	62.32	62.32
TraesCS1A01G411700.1	Wheat	nucleus	60.87	61.76
Os05t0573500-01	Rice	nucleus	63.77	61.54
Zm00001d030151_P001	Maize	mitochondrion	34.78	58.54
HORVU7Hr1G082430.1	Barley	nucleus	47.83	53.66
HORVU1Hr1G090450.9	Barley	nucleus	62.32	52.12
GSMUA_Achr8P28050_001	Banana	nucleus	56.52	49.68
Zm00001d038397_P005	Maize	nucleus	52.17	40.45
Zm00001d042968_P002	Maize	extracellular, nucleus	52.17	37.89
Zm00001d010574_P001	Maize	nucleus	50.0	36.9
Zm00001d042196_P001	Maize	nucleus	43.48	33.52
Zm00001d011915_P001	Maize	nucleus	40.58	32.75
Zm00001d006813_P001	Maize	nucleus	44.2	29.76
Zm00001d022099_P001	Maize	nucleus	44.93	29.25
Zm00001d029505_P001	Maize	nucleus	46.38	28.83
Zm00001d042197_P001	Maize	plastid	30.43	25.3
Zm00001d049485_P001	Maize	nucleus	47.1	25.1
Zm00001d051697_P001	Maize	nucleus	41.3	21.59
Zm00001d017898_P001	Maize	nucleus	41.3	20.5
Zm00001d045772_P001	Maize	nucleus, plastid	38.41	20.23
Zm00001d017899_P001	Maize	nucleus	26.81	18.78
Zm00001d019101_P001	Maize	nucleus	24.64	17.26
Zm00001d012445_P001	Maize	nucleus	44.2	11.55
Zm00001d050242_P002	Maize	plastid	24.64	11.45
Zm00001d032328_P005	Maize	extracellular, plastid	23.91	10.96

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	UniProt:A0A1D6MLX8	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	ProteinID:ONM30216.1
PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF49	SUPFAM:SSF47113
InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0008455B4F	EnsemblPlantsGene:Zm00001d039957	EnsemblPlants:Zm00001d039957_P001	EnsemblPlants:Zm00001d039957_T001	:

Description

CCAAT-DR1-transcription factor 4Nuclear transcription factor Y subunit B-8

Coordinates

chr3:-:20590750..20592623

Molecular Weight (calculated)

15460.2 Da

IEP (calculated)

5.740

GRAVY (calculated)

-0.594

Length

138 amino acids

Sequence
(BLAST)

001: MSEVEANTGG GGKEQDRFLP VANIGLIMRR AVPENGKIAR DARESIQECV SEFISFITSE ASDKCVKERR KTINDNDIIW SLGTLGFEEY VEPLKIYLNN
101: YRESILFGGN VKGHGHTLEV DSKSKRCPLA SQQEEHKS

Best Arabidopsis Sequence Match ( AT2G38880.3 )
(BLAST)

001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE LEGDNKGSGK SGDGSNRDAG GGVSGEEMPV

Arabidopsis Description

NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.