Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G442000.1 | Wheat | nucleus | 98.53 | 98.53 |
| TraesCS1A01G411700.1 | Wheat | nucleus | 97.06 | 97.06 |
| Os05t0573500-01 | Rice | nucleus | 81.62 | 77.62 |
| HORVU7Hr1G119940.1 | Barley | nucleus | 73.53 | 77.52 |
| HORVU5Hr1G004870.1 | Barley | nucleus | 65.44 | 76.72 |
| Zm00001d009636_P001 | Maize | nucleus | 72.06 | 75.97 |
| Zm00001d001775_P001 | Maize | nucleus | 50.74 | 75.82 |
| HORVU3Hr1G047250.1 | Barley | nucleus | 73.53 | 72.46 |
| OQU78466 | Sorghum | nucleus | 66.18 | 65.69 |
| HORVU1Hr1G090450.9 | Barley | nucleus | 77.94 | 64.24 |
| HORVU7Hr1G082430.1 | Barley | nucleus | 55.88 | 61.79 |
| Zm00001d039957_P001 | Maize | nucleus | 62.5 | 61.59 |
| GSMUA_Achr8P28050_001 | Banana | nucleus | 66.91 | 57.96 |
| TraesCS3D01G347000.1 | Wheat | nucleus | 58.82 | 49.08 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 58.82 | 43.96 |
| TraesCS3D01G450100.1 | Wheat | nucleus | 48.53 | 35.87 |
| TraesCS2D01G180700.1 | Wheat | nucleus | 54.41 | 32.89 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 38.24 | 30.23 |
| TraesCS2D01G358300.1 | Wheat | nucleus | 55.15 | 30.12 |
| TraesCS6D01G268100.1 | Wheat | cytosol, nucleus, plastid | 33.82 | 28.22 |
| TraesCS6D01G268000.1 | Wheat | nucleus | 44.12 | 24.39 |
| TraesCS7D01G216600.1 | Wheat | nucleus | 38.97 | 18.09 |
| TraesCS7D01G216800.1 | Wheat | nucleus | 38.97 | 17.85 |
| TraesCS3D01G443500.1 | Wheat | cytosol, mitochondrion, nucleus | 22.79 | 10.4 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF49 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS1D01G419500 | EnsemblPlants:TraesCS1D01G419500.1 |
| InterPro:Transcrpt_fac_NFYB/HAP3_CS | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:476558083..476559871
Molecular Weight (calculated)
14961.8 Da
IEP (calculated)
5.060
GRAVY (calculated)
-0.633
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEAVGTPES GGAKEQERFL PIANIGRIMR RGVPENGKIA KDAKESIQEC VSEFISFITS EASDKCMKEK RKTINGDDLI WSMGTLGFED YVEPLKLYLK
101: LYREMEGDTS KGSKSEQAGK KEVALNGQPG SSFNGM
101: LYREMEGDTS KGSKSEQAGK KEVALNGQPG SSFNGM
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
Arabidopsis Description
NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.