Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G119940.1 | Barley | nucleus | 89.66 | 80.62 |
| HORVU3Hr1G047250.1 | Barley | nucleus | 89.66 | 75.36 |
| TraesCS1D01G419500.1 | Wheat | nucleus | 76.72 | 65.44 |
| TraesCS1B01G442000.1 | Wheat | nucleus | 75.86 | 64.71 |
| TraesCS1A01G411700.1 | Wheat | nucleus | 75.86 | 64.71 |
| Zm00001d001775_P001 | Maize | nucleus | 48.28 | 61.54 |
| HORVU1Hr1G090450.9 | Barley | nucleus | 81.9 | 57.58 |
| Os05t0573500-01 | Rice | nucleus | 70.69 | 57.34 |
| Zm00001d009636_P001 | Maize | nucleus | 62.93 | 56.59 |
| OQU78466 | Sorghum | nucleus | 66.38 | 56.2 |
| Zm00001d039957_P001 | Maize | nucleus | 63.79 | 53.62 |
| HORVU7Hr1G082430.1 | Barley | nucleus | 54.31 | 51.22 |
| GSMUA_Achr8P28050_001 | Banana | nucleus | 68.1 | 50.32 |
| HORVU7Hr1G105460.1 | Barley | nucleus | 54.31 | 36.42 |
| HORVU7Hr1G105500.6 | Barley | nucleus | 54.31 | 34.05 |
| HORVU3Hr1G098500.1 | Barley | nucleus | 50.0 | 31.69 |
| HORVU2Hr1G032320.1 | Barley | nucleus | 55.17 | 28.57 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 39.66 | 26.74 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 57.76 | 26.59 |
| HORVU3Hr1G087390.1 | Barley | mitochondrion | 56.03 | 25.19 |
| HORVU2Hr1G087460.1 | Barley | nucleus | 52.59 | 24.5 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 45.69 | 21.9 |
| HORVU6Hr1G072140.1 | Barley | cytosol | 26.72 | 19.02 |
| HORVU7Hr1G043520.1 | Barley | nucleus | 43.97 | 15.99 |
| HORVU3Hr1G097680.4 | Barley | cytosol, mitochondrion, nucleus | 22.41 | 8.47 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | UniProt:A0A287Q856 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | EnsemblPlantsGene:HORVU5Hr1G004870 | EnsemblPlants:HORVU5Hr1G004870.1 | InterPro:Histone-fold |
| InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF49 |
| SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000B4605B3 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:8398335..8399222
Molecular Weight (calculated)
12743.3 Da
IEP (calculated)
4.781
GRAVY (calculated)
-0.328
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: DQAAVMSEVV GTPESDGGGG VKEQERFLPI AKIAKDAKES IQECVSEFIS FITSEASEKC MKEKRKTING DDLIWSMGTL GFEDYVEPLK LYLKLYREKV
101: KCMPSRAASG NSVLAS
101: KCMPSRAASG NSVLAS
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE VW
101: LKIYLARYRE VW
Arabidopsis Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.