Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G268100.1 | Wheat | cytosol, nucleus, plastid | 68.1 | 68.1 |
| TraesCS6B01G316700.1 | Wheat | cytosol, nucleus, plastid | 68.1 | 68.1 |
| TraesCS6A01G287400.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 67.48 | 64.33 |
| Os02t0725900-01 | Rice | nucleus | 43.56 | 38.17 |
| Zm00001d017899_P001 | Maize | nucleus | 40.49 | 33.5 |
| HORVU7Hr1G082430.1 | Barley | nucleus | 25.15 | 33.33 |
| EES05602 | Sorghum | nucleus | 36.81 | 30.46 |
| HORVU5Hr1G004870.1 | Barley | nucleus | 19.02 | 26.72 |
| HORVU7Hr1G119940.1 | Barley | nucleus | 19.02 | 24.03 |
| HORVU1Hr1G090450.9 | Barley | nucleus | 22.09 | 21.82 |
| HORVU3Hr1G047250.1 | Barley | nucleus | 18.4 | 21.74 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 22.09 | 20.93 |
| HORVU3Hr1G098500.1 | Barley | nucleus | 22.09 | 19.67 |
| HORVU7Hr1G105460.1 | Barley | nucleus | 20.25 | 19.08 |
| HORVU7Hr1G105500.6 | Barley | nucleus | 20.25 | 17.84 |
| Bra016397.1-P | Field mustard | cytosol | 20.86 | 17.71 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 23.31 | 15.7 |
| HORVU2Hr1G087460.1 | Barley | nucleus | 22.7 | 14.86 |
| HORVU2Hr1G032320.1 | Barley | nucleus | 19.02 | 13.84 |
| HORVU7Hr1G043520.1 | Barley | nucleus | 25.15 | 12.85 |
| HORVU3Hr1G087390.1 | Barley | mitochondrion | 20.25 | 12.79 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 19.63 | 12.7 |
| CDY38832 | Canola | nucleus | 16.56 | 11.79 |
| HORVU3Hr1G097680.4 | Barley | cytosol, mitochondrion, nucleus | 15.95 | 8.47 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | UniProt:A0A287UMD3 | InterPro:CBFA_NFYB_domain | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | EnsemblPlantsGene:HORVU6Hr1G072140 | EnsemblPlants:HORVU6Hr1G072140.1 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 |
| PRINTS:PR00615 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF38 | SUPFAM:SSF47113 | UniParc:UPI000B461187 | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:+:501356775..501357266
Molecular Weight (calculated)
14047.5 Da
IEP (calculated)
8.685
GRAVY (calculated)
-0.451
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXRRV LPSNVKIAES AKQLTHDCAV EFVGFVRGEA SERARSEYRR TVAPEDFTWS CQSLGFDSYV
101: QPMQTYLRGY REYDTARGRS TRGARAPAPP AMTSFASPGE PVTVTKEELE FLRSVIPPPP GGY
101: QPMQTYLRGY REYDTARGRS TRGARAPAPP AMTSFASPGE PVTVTKEELE FLRSVIPPPP GGY
001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
Arabidopsis Description
NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.