Factsheet for HORVU2Hr1G087460.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G378700.1	Wheat	nucleus	97.59	97.59
TraesCS2D01G358300.1	Wheat	nucleus	95.98	95.98
TraesCS2A01G359400.1	Wheat	nucleus	95.18	95.18
GSMUA_Achr6P02820_001	Banana	nucleus	45.38	66.86
Zm00001d049485_P001	Maize	nucleus	69.48	66.8
EES14637	Sorghum	nucleus	69.08	62.55
Os08t0174500-01	Rice	nucleus	68.67	57.58
VIT_07s0031g01460.t01	Wine grape	nucleus	46.99	56.25
HORVU7Hr1G105460.1	Barley	nucleus	37.35	53.76
HORVU5Hr1G004870.1	Barley	nucleus	24.5	52.59
HORVU7Hr1G119940.1	Barley	nucleus	26.91	51.94
HORVU7Hr1G105500.6	Barley	nucleus	37.35	50.27
HORVU3Hr1G047250.1	Barley	nucleus	27.71	50.0
PGSC0003DMT400095009	Potato	nucleus	38.15	49.74
Solyc04g054150.1.1	Tomato	nucleus	37.35	49.47
HORVU2Hr1G032320.1	Barley	nucleus	41.37	45.98
HORVU7Hr1G082430.1	Barley	nucleus	22.49	45.53
HORVU1Hr1G090450.9	Barley	nucleus	29.72	44.85
KRH59435	Soybean	nucleus	38.96	43.11
HORVU3Hr1G098500.1	Barley	nucleus	30.52	41.53
KRH43304	Soybean	nucleus	38.96	41.1
HORVU3Hr1G098490.1	Barley	cytosol, mitochondrion, nucleus, plastid	25.3	36.63
HORVU1Hr1G071620.5	Barley	nucleus, plastid	33.33	32.94
HORVU3Hr1G087390.1	Barley	mitochondrion	32.93	31.78
HORVU6Hr1G072110.1	Barley	nucleus	29.72	30.58
HORVU6Hr1G072140.1	Barley	cytosol	14.86	22.7
HORVU7Hr1G043520.1	Barley	nucleus	28.51	22.26
HORVU3Hr1G097680.4	Barley	cytosol, mitochondrion, nucleus	13.65	11.07

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0043565	GO:GO:0046982	GO:GO:0048579
GO:GO:0051512	EnsemblPlantsGene:HORVU2Hr1G087460	EnsemblPlants:HORVU2Hr1G087460.1	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M0X822
PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF48	SUPFAM:SSF47113
InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000294B96B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:628025596..628026788

Molecular Weight (calculated)

26137.3 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.568

Length

249 amino acids

Sequence
(BLAST)

001: MKSRKSYGQQ QSHLLSPVGS PSSDNGGGDS PAKEQDRFLP IANVSRIMKR SLPANAKISK EAKETVQECV SEFISFVTGE ASDKCQREKR KTINGDDLLW
101: AMTTLGFEVY VAPLKAYLNR YREVEGEKAA VVGGSRHGDD DAHSSLSAGA DALAPPYPHG AGDRGVQDGD VGGHDAHVGL MMGANVGFSP GTGTTFYAAQ
201: GAAHGRRAYG GGEGARGIDF EGAFGGDRGK NGVGGEREFA GHLHGAVQW

Best Arabidopsis Sequence Match ( AT2G37060.1 )
(BLAST)

001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD

Arabidopsis Description

NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.