Factsheet for TraesCS2A01G359400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G378700.1	Wheat	nucleus	97.59	97.59
TraesCS2D01G358300.1	Wheat	nucleus	96.79	96.79
HORVU2Hr1G087460.1	Barley	nucleus	95.18	95.18
GSMUA_Achr6P02820_001	Banana	nucleus	44.58	65.68
Zm00001d049485_P001	Maize	nucleus	68.27	65.64
EES14637	Sorghum	nucleus	67.47	61.09
Os08t0174500-01	Rice	nucleus	67.07	56.23
VIT_07s0031g01460.t01	Wine grape	nucleus	46.59	55.77
TraesCS7A01G486400.1	Wheat	cytosol	22.89	53.77
TraesCS1A01G411700.1	Wheat	nucleus	28.92	52.94
TraesCS3A01G352900.1	Wheat	nucleus	32.93	50.31
TraesCS3A01G026900.1	Wheat	nucleus	40.56	50.0
PGSC0003DMT400095009	Potato	nucleus	37.75	49.21
Solyc04g054150.1.1	Tomato	nucleus	36.95	48.94
TraesCS1A01G288500.3	Wheat	nucleus	33.73	46.15
TraesCS2A01G173500.1	Wheat	nucleus	40.96	45.13
KRH59435	Soybean	nucleus	38.96	43.11
KRH43304	Soybean	nucleus	39.76	41.95
TraesCS3A01G457100.1	Wheat	nucleus	31.33	41.05
TraesCS3A01G457000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.51	38.37
TraesCS7A01G214800.1	Wheat	cytosol	24.9	29.95
TraesCS6A01G287300.1	Wheat	nucleus	29.32	29.67
TraesCS6A01G287400.2	Wheat	cytosol, mitochondrion, nucleus, plastid	19.28	28.07
TraesCS7A01G214900.1	Wheat	nucleus	26.91	25.19
TraesCS7A01G214700.1	Wheat	nucleus	26.91	24.45
TraesCS7A01G214600.1	Wheat	nucleus	26.1	24.44
TraesCS7A01G214500.1	Wheat	nucleus	26.91	22.48
TraesCS3A01G450700.1	Wheat	cytosol, mitochondrion, nucleus	14.06	12.03

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0043565	GO:GO:0046982	GO:GO:0048579
GO:GO:0051512	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685
PANTHER:PTHR11064	PANTHER:PTHR11064:SF48	SUPFAM:SSF47113	EnsemblPlantsGene:TraesCS2A01G359400	EnsemblPlants:TraesCS2A01G359400.1	InterPro:Transcrpt_fac_NFYB/HAP3_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:603523693..603524442

Molecular Weight (calculated)

26204.5 Da

IEP (calculated)

6.724

GRAVY (calculated)

-0.549

Length

249 amino acids

Sequence
(BLAST)

001: MKSRKSYGQQ QSHLLSPVGS PSSDNGGGDS PAKEQDRFLP IANVSRIMKR SLPANAKISK EAKETVQECV SEFISFVTGE ASDKCQREKR KTINGDDLLW
101: AMTTLGFEVY VAPLKAYLNR YREVEGEKAA VVGGSRLGDD DAHSSLSAAG DALAPQYTHG AGDRGVQDGD LGGHDAHVGL MMGVNMGFNP GTGTTFYAAP
201: GAAHGRRAYG GGEGARGIDF EAAFGGDRGK NGAGGEREFA GHLHGAVQW

Best Arabidopsis Sequence Match ( AT2G37060.1 )
(BLAST)

001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD

Arabidopsis Description

NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.