Factsheet for Os08t0174500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049485_P001	Maize	nucleus	64.98	74.52
EES14637	Sorghum	nucleus	66.67	72.0
GSMUA_Achr6P02820_001	Banana	nucleus	39.39	69.23
HORVU2Hr1G087460.1	Barley	nucleus	57.58	68.67
TraesCS2B01G378700.1	Wheat	nucleus	56.9	67.87
TraesCS2D01G358300.1	Wheat	nucleus	56.23	67.07
TraesCS2A01G359400.1	Wheat	nucleus	56.23	67.07
VIT_07s0031g01460.t01	Wine grape	nucleus	38.38	54.81
Os05t0573500-01	Rice	nucleus	25.59	53.15
Os07t0606600-01	Rice	nucleus	38.72	51.34
PGSC0003DMT400095009	Potato	nucleus	32.32	50.26
Solyc04g054150.1.1	Tomato	nucleus	31.65	50.0
Os03t0413000-01	Rice	nucleus	36.36	49.32
Os05t0463800-02	Rice	nucleus	28.96	46.49
Os01t0834400-02	Rice	nucleus	27.27	45.51
KRH59435	Soybean	nucleus	34.34	45.33
Os01t0935200-01	Rice	nucleus	26.94	45.2
KRH43304	Soybean	nucleus	34.01	42.8
Os02t0725700-01	Rice	nucleus	26.26	30.71
Os06t0285200-01	Rice	nucleus	24.24	28.8
Os02t0725900-01	Rice	nucleus	16.84	26.88
Os08t0383700-02	Rice	cytosol, extracellular	4.71	5.65

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:4344784	EMBL:AB124651	ProteinID:ADK62361.1	EMBL:AP005164
ProteinID:BAF23021.1	ProteinID:BAF34522.1	ProteinID:BAF64447.1	ProteinID:BAL45947.1	ProteinID:BAL45949.1	ProteinID:BAL45950.1
ProteinID:BAL45951.1	ProteinID:BAT04049.1	InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0040008
GO:GO:0043565	GO:GO:0046982	GO:GO:0048579	GO:GO:0051512	InterPro:Histone-fold	InterPro:IPR009072
EnsemblPlantsGene:Os08g0174500	EnsemblPlants:Os08t0174500-01	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF48	UniProt:Q0J7P4	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0000DD93EA	RefSeq:XP_015649101.1
SEG:seg	:	:	:	:	:

Description

Heading date (QTL)-5(t)Putative HAP3 subunit of the CCAAT box-binding transcription factor, Flowering time, Short-day promotion, Long-day repression (Os08t0174500-01);Similar to Heading date 5. (Os08t0174500-02)

Coordinates

chr8:-:4333752..4334822

Molecular Weight (calculated)

29812.5 Da

IEP (calculated)

6.235

GRAVY (calculated)

-0.426

Length

297 amino acids

Sequence
(BLAST)

001: MKSRKSYGHL LSPVGSPPLD NESGEAAAAA AAGGGGCGSS AGYVVYGGGG GGDSPAKEQD RFLPIANVSR IMKRSLPANA KISKESKETV QECVSEFISF
101: VTGEASDKCQ REKRKTINGD DLLWAMTTLG FEAYVGPLKS YLNRYREAEG EKADVLGGAG GAAAARHGEG GCCGGGGGGA DGVVIDGHYP LAGGLSHSHH
201: GHQQQDGGGD VGLMMGGGDA GVGYNAGAGS TTTAFYAPAA TAASGNKAYC GGDGSRVMEF EGIGGEEESG GGGGGGERGF AGHLHGVQWF RLKRNTN

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.