Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G347000.1 | Wheat | nucleus | 80.34 | 87.73 |
| TraesCS3B01G385600.1 | Wheat | nucleus | 80.34 | 87.73 |
| TraesCS3A01G352900.1 | Wheat | nucleus | 79.78 | 87.12 |
| OQU87808 | Sorghum | nucleus | 73.6 | 79.39 |
| Os05t0463800-02 | Rice | nucleus | 75.84 | 72.97 |
| Zm00001d042968_P002 | Maize | extracellular, nucleus | 73.03 | 68.42 |
| GSMUA_Achr11P... | Banana | nucleus | 50.0 | 67.94 |
| GSMUA_Achr5P28380_001 | Banana | nucleus | 51.69 | 66.19 |
| KRH17618 | Soybean | plastid | 36.52 | 57.52 |
| Os05t0573500-01 | Rice | nucleus | 44.94 | 55.94 |
| HORVU3Hr1G087390.1 | Barley | mitochondrion | 80.9 | 55.81 |
| Os01t0935200-01 | Rice | nucleus | 41.01 | 41.24 |
| Os03t0413000-01 | Rice | nucleus | 48.88 | 39.73 |
| Os07t0606600-01 | Rice | nucleus | 48.31 | 38.39 |
| Os08t0174500-01 | Rice | nucleus | 45.51 | 27.27 |
| Os02t0725700-01 | Rice | nucleus | 38.2 | 26.77 |
| Os02t0725900-01 | Rice | nucleus | 26.97 | 25.81 |
| Os06t0285200-01 | Rice | nucleus | 35.39 | 25.2 |
| Os08t0383700-02 | Rice | cytosol, extracellular | 7.3 | 5.24 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | EnsemblPlantsGene:Os01g0834400 |
| EnsemblPlants:Os01t0834400-02 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF37 |
| SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0000196668 | : | : | : |
Description
HAP3A SUBUNIT OF CCAAT-BOX BINDING COMPLEXSimilar to HAP3. (Os01t0834400-01);CCAAT-box binding transcription factor, Chloroplast biogenesis (Os01t0834400-02)
Coordinates
chr1:-:35756464..35758551
Molecular Weight (calculated)
19200.8 Da
IEP (calculated)
5.683
GRAVY (calculated)
-0.558
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMMDLGFLE GGAGMADAGH DESGSPPRSG GVREQDRFLP IANISRIMKK AVPANGKIAK DAKETLQECV SEFISFVTSE ASDKCQKEKR KTINGEDLLF
101: AMGTLGFEEY VDPLKIYLHK YREMEGDSKL SSKAGDGSVK KDTIGPHSGA SSSSAQGMVG AYTQGMGYMQ PQYHNGDT
101: AMGTLGFEEY VDPLKIYLHK YREMEGDSKL SSKAGDGSVK KDTIGPHSGA SSSSAQGMVG AYTQGMGYMQ PQYHNGDT
001: MAESQTGGGG GGSHESGGDQ SPRSLNVREQ DRFLPIANIS RIMKRGLPLN GKIAKDAKET MQECVSEFIS FVTSEASDKC QREKRKTING DDLLWAMATL
101: GFEDYIDPLK VYLMRYREME GDTKGSGKGG ESSAKRDGQP SQVSQFSQVP QQGSFSQGPY GNSQGSNMMV QMPGTE
101: GFEDYIDPLK VYLMRYREME GDTKGSGKGG ESSAKRDGQP SQVSQFSQVP QQGSFSQGPY GNSQGSNMMV QMPGTE
Arabidopsis Description
NFYB10Nuclear transcription factor Y subunit B-10 [Source:UniProtKB/Swiss-Prot;Acc:Q67XJ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.