Factsheet for GSMUA_Achr11P24630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P28380_001	Banana	nucleus	93.89	88.49
KRH17618	Soybean	plastid	51.15	59.29
TraesCS3D01G347000.1	Wheat	nucleus	70.23	56.44
TraesCS3B01G385600.1	Wheat	nucleus	70.23	56.44
TraesCS3A01G352900.1	Wheat	nucleus	70.23	56.44
OQU87808	Sorghum	nucleus	70.23	55.76
GSMUA_Achr8P28050_001	Banana	nucleus	65.65	54.78
GSMUA_Achr8P17450_001	Banana	nucleus	77.86	52.58
Os01t0834400-02	Rice	nucleus	67.94	50.0
GSMUA_Achr2P13670_001	Banana	nucleus	63.36	49.7
Zm00001d042968_P002	Maize	extracellular, nucleus	70.99	48.95
GSMUA_Achr11P...	Banana	nucleus	58.02	45.78
GSMUA_Achr5P17480_001	Banana	nucleus	54.96	44.72
GSMUA_Achr6P02820_001	Banana	nucleus	56.49	43.79
GSMUA_Achr4P27850_001	Banana	nucleus	64.12	43.52
GSMUA_Achr8P10020_001	Banana	nucleus	55.73	41.71
GSMUA_Achr8P21910_001	Banana	cytosol	37.4	41.53
GSMUA_AchrUn_...	Banana	nucleus	61.07	39.8
GSMUA_Achr6P35500_001	Banana	nucleus	41.98	38.73
GSMUA_Achr8P05300_001	Banana	nucleus	43.51	37.25
HORVU3Hr1G087390.1	Barley	mitochondrion	70.23	35.66
GSMUA_Achr9P09260_001	Banana	nucleus	43.51	32.57
GSMUA_Achr3P04310_001	Banana	nucleus	51.91	32.08
GSMUA_Achr1P20700_001	Banana	cytosol	10.69	26.42
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	26.72	20.23
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	16.03	17.8
Zm00001d012445_P001	Maize	nucleus	54.96	13.64

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr11G24630_001	EnsemblPlants:GSMUA_Achr11P24630_001	EnsemblPlants:GSMUA_Achr11T24630_001	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M0RV43	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF85	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000296418D	SEG:seg	:

Description

Nuclear transcription factor Y subunit B-8 [Source:GMGC_GENE;Acc:GSMUA_Achr11G24630_001]

Coordinates

chr11:-:24080779..24081250

Molecular Weight (calculated)

14593.6 Da

IEP (calculated)

8.053

GRAVY (calculated)

-0.348

Length

131 amino acids

Sequence
(BLAST)

001: MAEAPPASPG GGGGSHESGE HSPRAGAGVR EQDRFLPIAN IIRIMKKALP ANAKIAKDAK ETMQECVSEF ISFVTSEASD RCQKEKRKTI NGDDLLWAMA
101: TLGFEEYIEP LKLYLQKYRE VLCFLRIAFR F

Best Arabidopsis Sequence Match ( AT2G38880.6 )
(BLAST)

001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE VCCFDSLIMC SEILNILVKR LVAVSNIEAC HDSSFTIPSI RLV

Arabidopsis Description

NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.