Factsheet for GSMUA_Achr5P28380_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	88.49	93.89
KRH17618	Soybean	plastid	49.64	61.06
TraesCS3D01G347000.1	Wheat	nucleus	68.35	58.28
TraesCS3B01G385600.1	Wheat	nucleus	68.35	58.28
TraesCS3A01G352900.1	Wheat	nucleus	68.35	58.28
OQU87808	Sorghum	nucleus	68.35	57.58
GSMUA_Achr8P28050_001	Banana	nucleus	61.15	54.14
GSMUA_Achr8P17450_001	Banana	nucleus	75.54	54.12
Os01t0834400-02	Rice	nucleus	66.19	51.69
GSMUA_Achr2P13670_001	Banana	nucleus	60.43	50.3
Zm00001d042968_P002	Maize	extracellular, nucleus	68.35	50.0
GSMUA_Achr11P...	Banana	nucleus	55.4	46.39
GSMUA_Achr5P17480_001	Banana	nucleus	52.52	45.34
GSMUA_Achr4P27850_001	Banana	nucleus	62.59	45.08
GSMUA_Achr6P02820_001	Banana	nucleus	53.96	44.38
GSMUA_Achr8P10020_001	Banana	nucleus	53.24	42.29
GSMUA_Achr8P21910_001	Banana	cytosol	35.25	41.53
GSMUA_AchrUn_...	Banana	nucleus	58.27	40.3
GSMUA_Achr6P35500_001	Banana	nucleus	40.29	39.44
GSMUA_Achr8P05300_001	Banana	nucleus	42.45	38.56
HORVU3Hr1G087390.1	Barley	mitochondrion	68.35	36.82
GSMUA_Achr9P09260_001	Banana	nucleus	41.73	33.14
GSMUA_Achr3P04310_001	Banana	nucleus	49.64	32.55
GSMUA_Achr1P20700_001	Banana	cytosol	10.07	26.42
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	25.18	20.23
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	15.11	17.8
Zm00001d012445_P001	Maize	nucleus	52.52	13.83

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr5G28380_001	EnsemblPlants:GSMUA_Achr5P28380_001	EnsemblPlants:GSMUA_Achr5T28380_001	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M0T2G2	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF85	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000295F7C4	SEG:seg	:

Description

Nuclear transcription factor Y subunit B-8 [Source:GMGC_GENE;Acc:GSMUA_Achr5G28380_001]

Coordinates

chr5:+:28603959..28604468

Molecular Weight (calculated)

15415.4 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.380

Length

139 amino acids

Sequence
(BLAST)

001: MAEAPPASPG GGGGSHESGE QSPRAGVGVR EQDRFLPIAN IIRIMKKALP ANAKIAKDAK ETMQECVSEF ISFVTSEASD RCQKEKRKTI NGDDLLWAMA
101: TLGFEEYIEP LKLYLQKYRE VLCSFRGYVL PFNVFSDHS

Best Arabidopsis Sequence Match ( AT2G37060.2 )
(BLAST)

001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD

Arabidopsis Description

NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.