Factsheet for GSMUA_Achr11P05710_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P10020_001	Banana	nucleus	86.14	81.71
KRH37126	Soybean	nucleus	50.0	70.94
KRH50875	Soybean	nucleus	50.6	69.42
KRH02238	Soybean	nucleus	50.0	67.48
KRH31905	Soybean	cytosol, mitochondrion, nucleus	57.83	66.21
KRH71548	Soybean	nucleus	58.43	65.99
VIT_05s0020g01350.t01	Wine grape	nucleus	53.61	64.49
Os01t0935200-01	Rice	nucleus	64.46	60.45
GSMUA_Achr5P17480_001	Banana	nucleus	58.43	60.25
Solyc01g067130.2.1	Tomato	plastid	50.0	60.14
KRH12126	Soybean	nucleus	51.81	59.72
PGSC0003DMT400058414	Potato	nucleus	48.8	59.56
Zm00001d042196_P001	Maize	nucleus	63.86	59.22
Zm00001d011915_P001	Maize	nucleus	60.84	59.06
EES04176	Sorghum	nucleus	64.46	58.79
GSMUA_Achr11P...	Banana	nucleus	45.78	58.02
HORVU3Hr1G098500.1	Barley	nucleus	63.86	57.92
TraesCSU01G203900.1	Wheat	nucleus	63.25	57.38
TraesCSU01G051000.1	Wheat	nucleus	63.25	57.38
TraesCSU01G050900.1	Wheat	nucleus	63.25	57.38
TraesCS3D01G450100.1	Wheat	nucleus	63.25	57.07
VIT_07s0104g01640.t01	Wine grape	nucleus	59.04	56.0
GSMUA_Achr5P28380_001	Banana	nucleus	46.39	55.4
TraesCS3A01G457100.1	Wheat	nucleus	63.25	55.26
Solyc06g009010.1.1	Tomato	nucleus	56.63	52.81
PGSC0003DMT400037958	Potato	nucleus	55.42	51.69
GSMUA_Achr8P21910_001	Banana	cytosol	33.73	47.46
GSMUA_Achr6P02820_001	Banana	nucleus	48.19	47.34
GSMUA_Achr2P13670_001	Banana	nucleus	47.59	47.31
GSMUA_Achr8P28050_001	Banana	nucleus	40.36	42.68
GSMUA_Achr4P27850_001	Banana	nucleus	48.8	41.97
GSMUA_Achr6P35500_001	Banana	nucleus	35.54	41.55
GSMUA_AchrUn_...	Banana	nucleus	49.4	40.8
GSMUA_Achr8P17450_001	Banana	nucleus	47.59	40.72
GSMUA_Achr8P05300_001	Banana	nucleus	34.94	37.91
GSMUA_Achr9P09260_001	Banana	nucleus	35.54	33.71
GSMUA_Achr3P04310_001	Banana	nucleus	36.75	28.77
GSMUA_Achr1P20700_001	Banana	cytosol	7.83	24.53
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	19.28	18.5
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	12.05	16.95

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr11G05710_001	EnsemblPlants:GSMUA_Achr11P05710_001	EnsemblPlants:GSMUA_Achr11T05710_001	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M0RPQ1	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF88	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00029484A2	:	:

Description

histone-like transcription factor and archaeal histone, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G05710_001]

Coordinates

chr11:+:4261219..4261719

Molecular Weight (calculated)

18054.0 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.795

Length

166 amino acids

Sequence
(BLAST)

001: MADNLGSSME SDGHHNYAGA ASGDGGVKEQ DRLLPIANVG RIMKQILPQN AKISKEAKET MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDICWALNTL
101: GFDDYVEPMK RYLQKYREME GDRAAGGGGH STKASSSSDA RDQPSAGAHF MFDPSERSKP SASRGF

Best Arabidopsis Sequence Match ( AT2G47810.1 )
(BLAST)

001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN

Arabidopsis Description

NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.