Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G203900.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCSU01G051000.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS3D01G450100.1 | Wheat | nucleus | 99.45 | 98.91 |
| HORVU3Hr1G098500.1 | Barley | nucleus | 97.27 | 97.27 |
| TraesCS3A01G457100.1 | Wheat | nucleus | 100.0 | 96.32 |
| EES04176 | Sorghum | nucleus | 70.49 | 70.88 |
| Zm00001d042196_P001 | Maize | nucleus | 68.85 | 70.39 |
| Os01t0935200-01 | Rice | nucleus | 67.76 | 70.06 |
| KRH50875 | Soybean | nucleus | 45.36 | 68.59 |
| KRH37126 | Soybean | nucleus | 43.72 | 68.38 |
| Zm00001d011915_P001 | Maize | nucleus | 61.75 | 66.08 |
| KRH02238 | Soybean | nucleus | 43.72 | 65.04 |
| GSMUA_Achr8P10020_001 | Banana | nucleus | 61.2 | 64.0 |
| VIT_05s0020g01350.t01 | Wine grape | nucleus | 48.09 | 63.77 |
| GSMUA_Achr11P... | Banana | nucleus | 57.38 | 63.25 |
| KRH31905 | Soybean | cytosol, mitochondrion, nucleus | 48.09 | 60.69 |
| KRH71548 | Soybean | nucleus | 47.54 | 59.18 |
| PGSC0003DMT400058414 | Potato | nucleus | 43.17 | 58.09 |
| Solyc01g067130.2.1 | Tomato | plastid | 43.17 | 57.25 |
| KRH12126 | Soybean | nucleus | 44.81 | 56.94 |
| GSMUA_Achr5P17480_001 | Banana | nucleus | 49.73 | 56.52 |
| VIT_07s0104g01640.t01 | Wine grape | nucleus | 48.09 | 50.29 |
| Solyc06g009010.1.1 | Tomato | nucleus | 47.54 | 48.88 |
| PGSC0003DMT400037958 | Potato | nucleus | 47.54 | 48.88 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCSU01G050900 | EnsemblPlants:TraesCSU01G050900.1 |
| InterPro:Transcrpt_fac_NFYB/HAP3_CS | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:40741699..40742250
Molecular Weight (calculated)
19208.4 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.615
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHHYTHLG GGSGSGGGGG GGSPPERLHG GGGSGDQGIK EQDRLLPIAN VGRIMKQVLP PNAKVSKEAK ETMQECVSEF ISFVTGEASD KCHKEKRKTV
101: NGDDVCWAFS ALGFDDYVDP MRRYLLKFRE LEGDRAAAAA SSRGGLPVPD ASTSGAGASG SGNFMFEAMD RRDNTGPGTG RQF
101: NGDDVCWAFS ALGFDDYVDP MRRYLLKFRE LEGDRAAAAA SSRGGLPVPD ASTSGAGASG SGNFMFEAMD RRDNTGPGTG RQF
001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
Arabidopsis Description
NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.