Factsheet for VIT_05s0020g01350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50875	Soybean	nucleus	65.94	75.21
KRH02238	Soybean	nucleus	64.49	72.36
KRH37126	Soybean	nucleus	59.42	70.09
Solyc01g067130.2.1	Tomato	plastid	65.22	65.22
PGSC0003DMT400058414	Potato	nucleus	63.77	64.71
KRH12126	Soybean	nucleus	64.49	61.81
VIT_14s0060g02660.t01	Wine grape	nucleus	63.04	59.18
GSMUA_Achr5P17480_001	Banana	nucleus	63.77	54.66
VIT_07s0104g01640.t01	Wine grape	nucleus	68.84	54.29
GSMUA_Achr11P...	Banana	nucleus	64.49	53.61
VIT_06s0004g03490.t01	Wine grape	nucleus	50.72	52.63
VIT_01s0010g01910.t01	Wine grape	cytosol	57.25	51.97
GSMUA_Achr8P10020_001	Banana	nucleus	64.49	50.86
EES04176	Sorghum	nucleus	65.94	50.0
Zm00001d042196_P001	Maize	nucleus	64.49	49.72
Os01t0935200-01	Rice	nucleus	63.04	49.15
VIT_01s0010g01940.t01	Wine grape	cytosol	53.62	48.68
Zm00001d011915_P001	Maize	nucleus	60.14	48.54
TraesCSU01G203900.1	Wheat	nucleus	63.77	48.09
HORVU3Hr1G098500.1	Barley	nucleus	63.77	48.09
TraesCSU01G050900.1	Wheat	nucleus	63.77	48.09
TraesCSU01G051000.1	Wheat	nucleus	63.77	48.09
TraesCS3D01G450100.1	Wheat	nucleus	63.77	47.83
TraesCS3A01G457100.1	Wheat	nucleus	63.77	46.32
VIT_08s0040g03260.t01	Wine grape	nucleus	51.45	44.1
VIT_13s0019g03600.t01	Wine grape	nucleus	52.9	41.48
VIT_00s0259g00180.t01	Wine grape	nucleus	55.8	37.2
VIT_19s0015g00440.t01	Wine grape	nucleus	55.07	36.19
VIT_00s1287g00010.t01	Wine grape	nucleus	55.8	35.32
VIT_07s0031g01460.t01	Wine grape	nucleus	52.9	35.1
VIT_00s0956g00020.t01	Wine grape	nucleus	47.1	30.81
VIT_19s0015g00580.t01	Wine grape	nucleus	39.86	26.32
VIT_12s0057g01010.t01	Wine grape	nucleus	54.35	25.68
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	36.23	23.26
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	23.19	20.65

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100256274	wikigene:100256274	EntrezGene:104879231	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain
ProteinID:CBI26063	ProteinID:CBI26063.3	UniProt:D7T6E2	EMBL:FN595749	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100256274
wikigene:LOC100256274	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF83
SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0001BE2AC8	ArrayExpress:VIT_05s0020g01350	EnsemblPlantsGene:VIT_05s0020g01350	EnsemblPlants:VIT_05s0020g01350.t01
RefSeq:XP_002275948	RefSeq:XP_002275948.2	RefSeq:XP_019075476.1	:	:	:

Description

No Description!

Coordinates

chr5:-:3059660..3060076

Molecular Weight (calculated)

15390.0 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.886

Length

138 amino acids

Sequence
(BLAST)

001: MVDNPGASAS TDDGSIKEQD RLLPIANVSR IMKQTLPTNA KISKEAKETM QECVSEFISF VTGEASEKCK KERRKTVNGD DICWALAALG FDDYAGPLKR
101: YLQRYRELEG DRVLNQEKAG NTEENDEPSS CRGSQPRN

Best Arabidopsis Sequence Match ( AT2G47810.1 )
(BLAST)

001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN

Arabidopsis Description

NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.