Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0010g01910.t01 | Wine grape | cytosol | 81.58 | 81.58 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 59.21 | 61.22 |
| Bra018585.1-P | Field mustard | nucleus | 49.34 | 56.82 |
| CDX95014 | Canola | nucleus | 49.34 | 56.82 |
| VIT_05s0020g01350.t01 | Wine grape | nucleus | 48.68 | 53.62 |
| AT1G09030.1 | Thale cress | nucleus | 48.68 | 53.24 |
| VIT_07s0104g01640.t01 | Wine grape | nucleus | 51.32 | 44.57 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 32.24 | 41.53 |
| OQU88166 | Sorghum | cytosol, mitochondrion, nucleus | 39.47 | 41.1 |
| VIT_06s0004g03490.t01 | Wine grape | nucleus | 35.53 | 40.6 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 42.11 | 37.21 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 42.11 | 37.21 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.45 | 36.63 |
| Zm00001d042197_P001 | Maize | plastid | 39.47 | 36.14 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 35.53 | 33.54 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 36.84 | 31.82 |
| VIT_00s0259g00180.t01 | Wine grape | nucleus | 42.76 | 31.4 |
| VIT_07s0031g01460.t01 | Wine grape | nucleus | 41.45 | 30.29 |
| VIT_00s1287g00010.t01 | Wine grape | nucleus | 42.76 | 29.82 |
| VIT_19s0015g00440.t01 | Wine grape | nucleus | 40.13 | 29.05 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 36.84 | 26.54 |
| VIT_19s0015g00580.t01 | Wine grape | nucleus | 35.53 | 25.84 |
| VIT_12s0057g01010.t01 | Wine grape | nucleus | 40.13 | 20.89 |
| VIT_19s0015g00590.t01 | Wine grape | cytosol, mitochondrion, nucleus | 28.95 | 20.47 |
| VIT_17s0000g04350.t01 | Wine grape | cytosol, mitochondrion, nucleus | 19.08 | 18.71 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100249348 | wikigene:100249348 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | ProteinID:CBI27499 |
| ProteinID:CBI27499.3 | UniProt:D7TAH6 | EMBL:FN595754 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | EntrezGene:LOC100249348 | wikigene:LOC100249348 | PFAM:PF00808 | PRINTS:PR00615 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF83 | SUPFAM:SSF47113 | UniParc:UPI0001BE2A5B | ArrayExpress:VIT_01s0010g01940 | EnsemblPlantsGene:VIT_01s0010g01940 | EnsemblPlants:VIT_01s0010g01940.t01 |
| RefSeq:XP_002269393 | RefSeq:XP_002269393.1 | RefSeq:XP_010656509.1 | : | : | : |
Description
No Description!
Coordinates
chr1:+:18582983..18583441
Molecular Weight (calculated)
16894.2 Da
IEP (calculated)
8.916
GRAVY (calculated)
-0.495
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKQDLLLP IANVGRIMKQ ILPPGAKVSK EAKETVQECV SEFVKFVTGE ASAKCRKEDR QTVTVDDICW ALSALGLDDY AGATVRYLHK YREFERERVN
101: QKVQNEVHST RAKSGASNYK CIQAGKQTET PTPLLLFKVT DQNGSSSLTK LS
101: QKVQNEVHST RAKSGASNYK CIQAGKQTET PTPLLLFKVT DQNGSSSLTK LS
001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
Arabidopsis Description
NFYB4Nuclear transcription factor Y subunit B-4 [Source:UniProtKB/Swiss-Prot;Acc:O04027]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.