Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU88166 | Sorghum | cytosol, mitochondrion, nucleus | 55.08 | 44.52 |
| Bra018585.1-P | Field mustard | nucleus | 45.76 | 40.91 |
| CDX95014 | Canola | nucleus | 45.76 | 40.91 |
| Zm00001d042197_P001 | Maize | plastid | 56.78 | 40.36 |
| PGSC0003DMT400063671 | Potato | nucleus | 44.07 | 37.68 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 46.61 | 37.41 |
| GSMUA_Achr11P... | Banana | nucleus | 41.53 | 37.4 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 53.39 | 36.63 |
| KRG92877 | Soybean | nucleus | 42.37 | 36.23 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 52.54 | 36.05 |
| AT1G09030.1 | Thale cress | nucleus | 42.37 | 35.97 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 51.69 | 35.47 |
| KRH33913 | Soybean | nucleus | 42.37 | 35.46 |
| GSMUA_Achr5P28380_001 | Banana | nucleus | 41.53 | 35.25 |
| GSMUA_Achr5P17480_001 | Banana | nucleus | 47.46 | 34.78 |
| Solyc01g099320.2.1 | Tomato | nucleus | 42.37 | 34.25 |
| VIT_01s0010g01910.t01 | Wine grape | cytosol | 44.07 | 34.21 |
| GSMUA_Achr11P... | Banana | nucleus | 47.46 | 33.73 |
| GSMUA_Achr2P13670_001 | Banana | nucleus | 47.46 | 33.53 |
| GSMUA_Achr8P10020_001 | Banana | nucleus | 49.15 | 33.14 |
| VIT_01s0010g01940.t01 | Wine grape | cytosol | 41.53 | 32.24 |
| GSMUA_Achr6P02820_001 | Banana | nucleus | 42.37 | 29.59 |
| GSMUA_Achr8P28050_001 | Banana | nucleus | 37.29 | 28.03 |
| GSMUA_Achr4P27850_001 | Banana | nucleus | 44.07 | 26.94 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 44.07 | 26.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.22 | 25.37 |
| GSMUA_Achr6P35500_001 | Banana | nucleus | 27.12 | 22.54 |
| GSMUA_Achr8P05300_001 | Banana | nucleus | 26.27 | 20.26 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 33.9 | 18.87 |
| GSMUA_Achr9P09260_001 | Banana | nucleus | 26.27 | 17.71 |
| GSMUA_Achr9P00790_001 | Banana | cytosol, nucleus, peroxisome | 18.64 | 12.72 |
| GSMUA_Achr1P20710_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 12.71 | 12.71 |
| GSMUA_Achr1P20700_001 | Banana | cytosol | 5.08 | 11.32 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| EnsemblPlantsGene:GSMUA_Achr8G21910_001 | EnsemblPlants:GSMUA_Achr8P21910_001 | EnsemblPlants:GSMUA_Achr8T21910_001 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M0TSJ4 |
| PFAM:PF00808 | PRINTS:PR00615 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | UniParc:UPI000296DE53 |
Description
Putative uncharacterized protein Sb03g045130 [Source:GMGC_GENE;Acc:GSMUA_Achr8G21910_001]
Coordinates
chr8:-:26648681..26649037
Molecular Weight (calculated)
13177.6 Da
IEP (calculated)
8.332
GRAVY (calculated)
-0.751
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKALPPNAK ISKQAKETMQ ECASEFIGFI TGEAADSCQK NNRKTINGDD ICAAMKTLGL DDYADAMRRY LHRYKEHEEK ATSRDHNKIA CIDVVDELSV
101: SKTSSSRRHL FPTNPSVG
101: SKTSSSRRHL FPTNPSVG
001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
Arabidopsis Description
NFYB4Nuclear transcription factor Y subunit B-4 [Source:UniProtKB/Swiss-Prot;Acc:O04027]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.