Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G004870.1 | Barley | nucleus | 50.32 | 68.1 |
| Os05t0573500-01 | Rice | nucleus | 61.15 | 67.13 |
| TraesCS1D01G419500.1 | Wheat | nucleus | 57.96 | 66.91 |
| HORVU7Hr1G119940.1 | Barley | nucleus | 54.78 | 66.67 |
| TraesCS1B01G442000.1 | Wheat | nucleus | 57.32 | 66.18 |
| OQU78466 | Sorghum | nucleus | 57.32 | 65.69 |
| GSMUA_Achr11P... | Banana | nucleus | 54.78 | 65.65 |
| TraesCS1A01G411700.1 | Wheat | nucleus | 56.69 | 65.44 |
| Zm00001d001775_P001 | Maize | nucleus | 36.94 | 63.74 |
| Zm00001d009636_P001 | Maize | nucleus | 52.23 | 63.57 |
| HORVU3Hr1G047250.1 | Barley | nucleus | 55.41 | 63.04 |
| GSMUA_Achr5P28380_001 | Banana | nucleus | 54.14 | 61.15 |
| HORVU1Hr1G090450.9 | Barley | nucleus | 60.51 | 57.58 |
| Zm00001d039957_P001 | Maize | nucleus | 49.68 | 56.52 |
| HORVU7Hr1G082430.1 | Barley | nucleus | 41.4 | 52.85 |
| GSMUA_Achr2P13670_001 | Banana | nucleus | 50.96 | 47.9 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 54.78 | 44.33 |
| GSMUA_Achr4P27850_001 | Banana | nucleus | 53.5 | 43.52 |
| GSMUA_Achr6P02820_001 | Banana | nucleus | 45.22 | 42.01 |
| GSMUA_Achr5P17480_001 | Banana | nucleus | 42.04 | 40.99 |
| GSMUA_Achr11P... | Banana | nucleus | 42.68 | 40.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.68 | 38.81 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 28.03 | 37.29 |
| GSMUA_Achr8P10020_001 | Banana | nucleus | 41.4 | 37.14 |
| GSMUA_Achr6P35500_001 | Banana | nucleus | 33.12 | 36.62 |
| GSMUA_Achr8P05300_001 | Banana | nucleus | 32.48 | 33.33 |
| GSMUA_Achr9P09260_001 | Banana | nucleus | 35.03 | 31.43 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 39.49 | 29.25 |
| GSMUA_Achr1P20700_001 | Banana | cytosol | 7.01 | 20.75 |
| GSMUA_Achr1P20710_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 14.01 | 18.64 |
| GSMUA_Achr9P00790_001 | Banana | cytosol, nucleus, peroxisome | 19.75 | 17.92 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0043565 | GO:GO:0046982 | EnsemblPlantsGene:GSMUA_Achr8G28050_001 | EnsemblPlants:GSMUA_Achr8P28050_001 |
| EnsemblPlants:GSMUA_Achr8T28050_001 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M0TUA8 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF49 | SUPFAM:SSF47113 | TMHMM:TMhelix | InterPro:Transcrpt_fac_NFYB/HAP3_CS |
| UniParc:UPI000296B933 | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G28050_001]
Coordinates
chr8:+:30967008..30967557
Molecular Weight (calculated)
17119.5 Da
IEP (calculated)
7.346
GRAVY (calculated)
-0.264
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESGVPGSP ESGHSGDHGG GGGGGASARE QDRFLPIANI GRIMRKAIPE NGKIAKDAKE SVQECVSEFI SFITSEASDK CQREKRKTIN GDDLLWAMGT
101: LGFEEYVEPL KLYLQLYREV NLLPSLPYFN TGTPFCRAVL IGGIASLFLR LLLRNRT
101: LGFEEYVEPL KLYLQLYREV NLLPSLPYFN TGTPFCRAVL IGGIASLFLR LLLRNRT
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE VCCFDSLIMC SEILNILVKR LVAVSNIEAC HDSSFTIPSI RLV
101: LKIYLARYRE VCCFDSLIMC SEILNILVKR LVAVSNIEAC HDSSFTIPSI RLV
Arabidopsis Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.