Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P35500_001 | Banana | nucleus | 67.43 | 83.1 |
| GSMUA_Achr8P05300_001 | Banana | nucleus | 59.43 | 67.97 |
| GSMUA_Achr4P27850_001 | Banana | nucleus | 55.43 | 50.26 |
| KRG98494 | Soybean | nucleus | 52.57 | 48.94 |
| KRH46369 | Soybean | nucleus | 52.57 | 48.17 |
| PGSC0003DMT400057066 | Potato | nucleus | 50.86 | 48.11 |
| Solyc07g065500.1.1 | Tomato | nucleus | 49.14 | 47.25 |
| VIT_19s0015g00440.t01 | Wine grape | nucleus | 55.43 | 46.19 |
| GSMUA_Achr2P13670_001 | Banana | nucleus | 43.43 | 45.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.86 | 44.28 |
| GSMUA_Achr11P... | Banana | nucleus | 32.57 | 43.51 |
| GSMUA_Achr5P28380_001 | Banana | nucleus | 33.14 | 41.73 |
| GSMUA_Achr6P02820_001 | Banana | nucleus | 37.71 | 39.05 |
| GSMUA_Achr11P... | Banana | nucleus | 33.71 | 35.54 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 38.86 | 35.05 |
| GSMUA_Achr8P28050_001 | Banana | nucleus | 31.43 | 35.03 |
| GSMUA_Achr8P10020_001 | Banana | nucleus | 32.57 | 32.57 |
| GSMUA_Achr5P17480_001 | Banana | nucleus | 28.57 | 31.06 |
| GSMUA_Achr1P20700_001 | Banana | cytosol | 8.57 | 28.3 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 17.71 | 26.27 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 28.57 | 23.58 |
| GSMUA_Achr9P00790_001 | Banana | cytosol, nucleus, peroxisome | 14.86 | 15.03 |
| GSMUA_Achr1P20710_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 8.0 | 11.86 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P09260_001 | EnsemblPlants:GSMUA_Achr9T09260_001 | EnsemblPlantsGene:GSMUA_Achr9G09260_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF87 | PFAM:PF00808 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI000294F966 | UniProt:M0TYT5 | MapMan:35.1 | : |
Description
Nuclear transcription factor Y subunit B-3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G09260_001]
Coordinates
chr9:+:6001480..6002103
Molecular Weight (calculated)
18047.1 Da
IEP (calculated)
8.470
GRAVY (calculated)
-0.647
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDNESGG HSNSKGGAAA REQDRFLPIA NVSRIMKKAL PANAKISKDA KETVQECVSE FISFNYVEPL KVYLQRFREM EGEKAGGGAA ASSQSQPKDG
101: SNAGGGPSTS VGGGGMYGGG MMMMGQQMYG TGPPSALQPF QHHQMTMGGI NSLSGGGGAD GGSPSSGSRQ RHDRI
101: SNAGGGPSTS VGGGGMYGGG MMMMGQQMYG TGPPSALQPF QHHQMTMGGI NSLSGGGGAD GGSPSSGSRQ RHDRI
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Arabidopsis Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.