Factsheet for GSMUA_Achr4P27850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13670_001	Banana	nucleus	59.59	68.86
GSMUA_Achr11P...	Banana	nucleus	43.52	64.12
GSMUA_Achr5P28380_001	Banana	nucleus	45.08	62.59
GSMUA_Achr8P05300_001	Banana	nucleus	48.19	60.78
VIT_00s0259g00180.t01	Wine grape	nucleus	63.73	59.42
GSMUA_AchrUn_...	Banana	nucleus	61.66	59.2
GSMUA_Achr6P35500_001	Banana	nucleus	42.49	57.75
VIT_00s1287g00010.t01	Wine grape	nucleus	63.73	56.42
GSMUA_Achr9P09260_001	Banana	nucleus	50.26	55.43
GSMUA_Achr6P02820_001	Banana	nucleus	48.19	55.03
GSMUA_Achr8P28050_001	Banana	nucleus	43.52	53.5
GSMUA_Achr8P17450_001	Banana	nucleus	50.26	50.0
GSMUA_Achr11P...	Banana	nucleus	41.97	48.8
GSMUA_Achr8P10020_001	Banana	nucleus	40.93	45.14
GSMUA_Achr5P17480_001	Banana	nucleus	37.31	44.72
GSMUA_Achr8P21910_001	Banana	cytosol	26.94	44.07
GSMUA_Achr3P04310_001	Banana	nucleus	37.82	34.43
GSMUA_Achr1P20700_001	Banana	cytosol	7.25	26.42
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	18.13	20.23
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	11.92	19.49

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr4G27850_001	EnsemblPlants:GSMUA_Achr4P27850_001	EnsemblPlants:GSMUA_Achr4T27850_001	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M0SSP7	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF87	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0002961CDB	SEG:seg	:

Description

Nuclear transcription factor Y subunit B-3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G27850_001]

Coordinates

chr4:+:26516118..26516959

Molecular Weight (calculated)

20381.9 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.582

Length

193 amino acids

Sequence
(BLAST)

001: MADSDNESGG HNNSGAGLGA AGELSSLREQ DRFLPIANVS RIMKKALPAN AKISKDAKET VQECVSEFIS FITGEASDKC QREKRKTING DDLLWAMTTL
101: GFEEYVEPLK VYLQRFRETE GEKGAGSSSG GAAMYGGGMT MMMGQQVYGS PPSSSPYHHH HQLAMAAKHT TGSGDGGGGS STSSTGIGRQ GRI

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.