Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034611 | Potato | mitochondrion | 35.38 | 62.5 |
| GSMUA_Achr11P... | Banana | nucleus | 32.08 | 51.91 |
| Solyc11g012750.1.1 | Tomato | nucleus | 36.79 | 51.32 |
| GSMUA_Achr5P28380_001 | Banana | nucleus | 32.55 | 49.64 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 48.11 | 48.34 |
| CDY25952 | Canola | nucleus | 47.17 | 48.31 |
| KRH01950 | Soybean | nucleus | 51.42 | 48.23 |
| KRH51197 | Soybean | nucleus | 50.47 | 47.98 |
| CDY41063 | Canola | nucleus | 47.17 | 47.85 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 14.62 | 46.97 |
| PGSC0003DMT400035117 | Potato | nucleus | 39.62 | 46.93 |
| Bra017471.1-P | Field mustard | nucleus | 45.75 | 46.41 |
| PGSC0003DMT400079574 | Potato | cytosol | 29.25 | 45.93 |
| Bra024924.1-P | Field mustard | nucleus | 49.06 | 45.02 |
| CDY17715 | Canola | nucleus | 49.06 | 45.02 |
| AT5G47670.3 | Thale cress | nucleus | 48.58 | 44.02 |
| Solyc04g015060.1.1 | Tomato | nucleus | 45.28 | 40.51 |
| GSMUA_Achr6P02820_001 | Banana | nucleus | 32.08 | 40.24 |
| PGSC0003DMT400035125 | Potato | cytosol | 35.38 | 39.68 |
| GSMUA_Achr8P28050_001 | Banana | nucleus | 29.25 | 39.49 |
| GSMUA_Achr2P13670_001 | Banana | nucleus | 30.66 | 38.92 |
| PGSC0003DMT400035119 | Potato | nucleus | 29.25 | 38.51 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 34.91 | 38.14 |
| GSMUA_Achr4P27850_001 | Banana | nucleus | 34.43 | 37.82 |
| GSMUA_Achr5P17480_001 | Banana | nucleus | 28.3 | 37.27 |
| GSMUA_Achr11P... | Banana | nucleus | 28.77 | 36.75 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 33.96 | 36.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.96 | 35.82 |
| Solyc05g005440.1.1 | Tomato | cytosol | 34.43 | 35.1 |
| GSMUA_Achr8P10020_001 | Banana | nucleus | 28.77 | 34.86 |
| PGSC0003DMT400035129 | Potato | nucleus | 35.85 | 33.93 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 18.87 | 33.9 |
| GSMUA_Achr8P05300_001 | Banana | nucleus | 24.06 | 33.33 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 33.02 | 31.96 |
| PGSC0003DMT400035028 | Potato | nucleus | 18.4 | 31.71 |
| GSMUA_Achr6P35500_001 | Banana | nucleus | 21.23 | 31.69 |
| Solyc05g005350.1.1 | Tomato | nucleus | 31.6 | 30.59 |
| Solyc05g005360.1.1 | Tomato | nucleus | 31.13 | 29.46 |
| GSMUA_Achr9P09260_001 | Banana | nucleus | 23.58 | 28.57 |
| Solyc05g005370.1.1 | Tomato | nucleus | 30.19 | 28.57 |
| PGSC0003DMT400035121 | Potato | nucleus | 19.34 | 26.62 |
| Solyc05g005380.1.1 | Tomato | plastid | 40.57 | 24.09 |
| GSMUA_Achr1P20700_001 | Banana | cytosol | 5.66 | 22.64 |
| Solyc05g005340.2.1 | Tomato | extracellular | 13.21 | 22.58 |
| GSMUA_Achr1P20710_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 11.79 | 21.19 |
| GSMUA_Achr9P00790_001 | Banana | cytosol, nucleus, peroxisome | 16.98 | 20.81 |
| Solyc02g032180.1.1 | Tomato | nucleus | 19.34 | 14.29 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009987 | GO:GO:0033613 | GO:GO:0043565 |
| GO:GO:0045893 | GO:GO:0046982 | EnsemblPlantsGene:GSMUA_Achr3G04310_001 | EnsemblPlants:GSMUA_Achr3P04310_001 | EnsemblPlants:GSMUA_Achr3T04310_001 | InterPro:Histone-fold |
| InterPro:IPR009072 | UniProt:M0SBP9 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF79 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000294BD27 | SEG:seg | : |
Description
Nuclear transcription factor Y subunit B-9 [Source:GMGC_GENE;Acc:GSMUA_Achr3G04310_001]
Coordinates
chr3:-:2772919..2773557
Molecular Weight (calculated)
23465.0 Da
IEP (calculated)
6.304
GRAVY (calculated)
-0.308
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MELNPAAAAG AAAPPVVREQ DRFMPIANVI RIMRRVLPAH AKIADDAKEM IQECVSEYIS FITSEANERC QREQRKTVTA EDVLWAMNKL GFDDYIEPLT
101: LFLHRYRELE GDHRGSVRGE ALQLIKHRAV PTAVPDIPTA ASQFFTTAPV PPPNFVMPPP ATAAPQHHNL LSESMVSYFL GMYGSGEGSS ASGSYSHVNG
201: MPNFDHPYPP YK
101: LFLHRYRELE GDHRGSVRGE ALQLIKHRAV PTAVPDIPTA ASQFFTTAPV PPPNFVMPPP ATAAPQHHNL LSESMVSYFL GMYGSGEGSS ASGSYSHVNG
201: MPNFDHPYPP YK
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.