Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035121 | Potato | nucleus | 58.06 | 46.75 |
| PGSC0003DMT400035028 | Potato | nucleus | 44.35 | 44.72 |
| Solyc05g005350.1.1 | Tomato | nucleus | 54.84 | 31.05 |
| Solyc05g005360.1.1 | Tomato | nucleus | 55.65 | 30.8 |
| Solyc05g005370.1.1 | Tomato | nucleus | 53.23 | 29.46 |
| Solyc10g009440.2.1 | Tomato | plastid | 36.29 | 18.91 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 35.48 | 18.49 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 32.26 | 18.26 |
| Solyc02g032180.1.1 | Tomato | nucleus | 38.71 | 16.72 |
| Solyc05g005440.1.1 | Tomato | cytosol | 27.42 | 16.35 |
| Solyc04g009520.2.1 | Tomato | nucleus | 11.29 | 16.28 |
| Solyc09g007290.2.1 | Tomato | nucleus | 16.13 | 15.5 |
| Solyc04g015060.1.1 | Tomato | nucleus | 25.81 | 13.5 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 22.58 | 13.21 |
| Solyc09g074760.1.1 | Tomato | nucleus | 14.52 | 13.04 |
| CDY25952 | Canola | nucleus | 20.97 | 12.56 |
| KRH51197 | Soybean | nucleus | 22.58 | 12.56 |
| Bra017471.1-P | Field mustard | nucleus | 20.97 | 12.44 |
| AT5G47670.3 | Thale cress | nucleus | 23.39 | 12.39 |
| KRH01950 | Soybean | nucleus | 22.58 | 12.39 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 20.97 | 12.32 |
| Solyc01g067130.2.1 | Tomato | plastid | 13.71 | 12.32 |
| CDY17715 | Canola | nucleus | 22.58 | 12.12 |
| Bra024924.1-P | Field mustard | nucleus | 22.58 | 12.12 |
| CDY41063 | Canola | nucleus | 20.16 | 11.96 |
| Solyc11g012750.1.1 | Tomato | nucleus | 14.52 | 11.84 |
| Solyc12g038390.1.1 | Tomato | cytosol | 7.26 | 10.98 |
| Solyc04g049910.2.1 | Tomato | nucleus | 14.52 | 10.91 |
| Solyc06g009010.1.1 | Tomato | nucleus | 14.52 | 10.11 |
| Solyc05g005380.1.1 | Tomato | plastid | 29.03 | 10.08 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 10.48 | 9.92 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 9.68 | 9.09 |
| Solyc07g065580.1.1 | Tomato | nucleus | 12.9 | 8.99 |
| Solyc07g065500.1.1 | Tomato | nucleus | 12.9 | 8.79 |
| Solyc07g065570.1.1 | Tomato | nucleus | 12.9 | 8.51 |
| Solyc12g027650.1.1 | Tomato | nucleus | 13.71 | 8.17 |
| Solyc04g054150.1.1 | Tomato | nucleus | 11.29 | 7.45 |
| Solyc12g006120.1.1 | Tomato | nucleus | 12.1 | 7.43 |
| Solyc01g099320.2.1 | Tomato | nucleus | 8.06 | 6.85 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 4.84 | 6.32 |
Protein Annotations
| EnsemblPlants:Solyc05g005340.2.1 | EnsemblPlantsGene:Solyc05g005340.2 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | UniParc:UPI0002766C47 | UniProt:K4BW65 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:277988..279746
Molecular Weight (calculated)
13722.3 Da
IEP (calculated)
6.327
GRAVY (calculated)
-0.294
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MESCNLCTFV GLLYMKPTLI ASVSSGTQSL IKTCINKFGF DDYIEPLPLY FPRYGEDDGG ECGSLESLLK RPMVNSTSSC NITPYHQHPN FPMAHHRLAY
101: PPPMGNGDIQ GDASNWKHFS VCNG
101: PPPMGNGDIQ GDASNWKHFS VCNG
001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.