Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g065570.1.1 | Tomato | nucleus | 87.64 | 82.98 |
| PGSC0003DMT400057379 | Potato | nucleus | 75.84 | 78.03 |
| Solyc04g009520.2.1 | Tomato | nucleus | 16.29 | 33.72 |
| Solyc09g074760.1.1 | Tomato | nucleus | 25.28 | 32.61 |
| Solyc01g067130.2.1 | Tomato | plastid | 24.16 | 31.16 |
| Solyc11g012750.1.1 | Tomato | nucleus | 24.72 | 28.95 |
| Solyc09g007290.2.1 | Tomato | nucleus | 19.1 | 26.36 |
| Solyc01g099320.2.1 | Tomato | nucleus | 21.35 | 26.03 |
| Solyc04g049910.2.1 | Tomato | nucleus | 22.47 | 24.24 |
| Solyc07g065500.1.1 | Tomato | nucleus | 24.72 | 24.18 |
| Solyc06g009010.1.1 | Tomato | nucleus | 24.16 | 24.16 |
| TraesCS7A01G214800.1 | Wheat | cytosol | 26.97 | 23.19 |
| Solyc12g006120.1.1 | Tomato | nucleus | 25.28 | 22.28 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 11.8 | 22.11 |
| Solyc05g005440.1.1 | Tomato | cytosol | 25.28 | 21.63 |
| Solyc04g015060.1.1 | Tomato | nucleus | 28.65 | 21.52 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 28.65 | 21.43 |
| Solyc04g054150.1.1 | Tomato | nucleus | 22.47 | 21.28 |
| Solyc10g009440.2.1 | Tomato | plastid | 28.09 | 21.01 |
| KRH70381 | Soybean | cytosol | 25.84 | 20.35 |
| Solyc12g027650.1.1 | Tomato | nucleus | 23.6 | 20.19 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 24.16 | 19.63 |
| Os06t0285200-01 | Rice | nucleus | 27.53 | 19.6 |
| Zm00001d045772_P001 | Maize | nucleus, plastid | 28.65 | 19.47 |
| TraesCS7A01G214900.1 | Wheat | nucleus | 28.65 | 19.17 |
| TraesCS7A01G214700.1 | Wheat | nucleus | 29.21 | 18.98 |
| TraesCS7B01G121900.1 | Wheat | nucleus | 28.65 | 18.21 |
| TraesCS7D01G216600.1 | Wheat | nucleus | 28.65 | 17.41 |
| TraesCS7A01G214600.1 | Wheat | nucleus | 25.84 | 17.29 |
| OQU76250 | Sorghum | nucleus | 25.28 | 17.24 |
| TraesCS7A01G214500.1 | Wheat | nucleus | 28.65 | 17.11 |
| HORVU7Hr1G043520.1 | Barley | nucleus | 30.34 | 16.93 |
| TraesCS7D01G216800.1 | Wheat | nucleus | 28.09 | 16.84 |
| Solyc05g005380.1.1 | Tomato | plastid | 33.71 | 16.81 |
| Solyc05g005360.1.1 | Tomato | nucleus | 20.79 | 16.52 |
| Solyc05g005350.1.1 | Tomato | nucleus | 20.22 | 16.44 |
| TraesCS7B01G121800.1 | Wheat | nucleus | 27.53 | 16.33 |
| Solyc05g005370.1.1 | Tomato | nucleus | 19.66 | 15.62 |
| KRH49798 | Soybean | cytosol, golgi, nucleus | 19.1 | 14.72 |
| Solyc05g005340.2.1 | Tomato | extracellular | 8.99 | 12.9 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 8.99 | 12.21 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 8.99 | 12.12 |
| Solyc02g032180.1.1 | Tomato | nucleus | 14.04 | 8.71 |
| Solyc12g038390.1.1 | Tomato | cytosol | 2.81 | 6.1 |
Protein Annotations
| EnsemblPlants:Solyc07g065580.1.1 | EnsemblPlantsGene:Solyc07g065580.1 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | PFAM:PF00808 | SEG:seg |
| SUPFAM:SSF47113 | UniParc:UPI000276AC62 | UniProt:K4CHN6 | MapMan:15.5.51.2 | : | : |
Description
No Description!
Coordinates
chr7:+:67287222..67287845
Molecular Weight (calculated)
20311.5 Da
IEP (calculated)
9.606
GRAVY (calculated)
-0.458
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNVNTGVDQ LARRLLEVQL PMANLTRIMR GILPTNAKIN DGSKESMQKL GSYYINRITK KAKERCNMER RKTVTAEDIL WAMINMGLTI HARLLAQYLN
101: RYHEYNSVSY YNVRKPHPNE PIPGYPYPHF PPNVLFYDPV TAALVTSRDF EMAAENDGSP SEASTSIVMP AYPFRQLG
101: RYHEYNSVSY YNVRKPHPNE PIPGYPYPHF PPNVLFYDPV TAALVTSRDF EMAAENDGSP SEASTSIVMP AYPFRQLG
001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.