CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045772_P001	Maize	nucleus, plastid	72.41	72.14
TraesCS7A01G214800.1	Wheat	cytosol	38.7	48.79
Os06t0285200-01	Rice	nucleus	42.91	44.8
TraesCS7A01G214700.1	Wheat	nucleus	44.83	42.7
TraesCS7B01G121900.1	Wheat	nucleus	44.83	41.79
TraesCS7A01G214900.1	Wheat	nucleus	41.76	40.98
TraesCS7A01G214600.1	Wheat	nucleus	40.61	39.85
TraesCS7D01G216600.1	Wheat	nucleus	44.44	39.59
TraesCS7B01G121800.1	Wheat	nucleus	45.21	39.33
TraesCS7A01G214500.1	Wheat	nucleus	43.68	38.26
TraesCS7D01G216800.1	Wheat	nucleus	43.3	38.05
OQU78466	Sorghum	nucleus	19.92	37.96
HORVU7Hr1G043520.1	Barley	nucleus	44.83	36.68
OQU88166	Sorghum	cytosol, mitochondrion, nucleus	19.92	35.62
EES04176	Sorghum	nucleus	23.75	34.07
OQU87808	Sorghum	nucleus	21.46	33.94
KXG30848	Sorghum	nucleus	33.72	31.88
KXG22176	Sorghum	nucleus	21.84	31.67
EER99684	Sorghum	nucleus	23.75	28.44
PGSC0003DMT400057379	Potato	nucleus	18.01	27.17
EER94693	Sorghum	nucleus	23.37	27.11
Solyc07g065570.1.1	Tomato	nucleus	18.39	25.53
Solyc07g065580.1.1	Tomato	nucleus	17.24	25.28
EES05602	Sorghum	nucleus	18.39	24.37
EES14637	Sorghum	nucleus	24.14	22.91
KRH70381	Soybean	cytosol	19.16	22.12
EER89161	Sorghum	cytosol, mitochondrion, nucleus	15.33	20.41
KRH49798	Soybean	cytosol, golgi, nucleus	16.86	19.05
EES13767	Sorghum	nucleus	16.09	14.14

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	UniProt:A0A1W0VSL1	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:OQU76250
ProteinID:OQU76250	ProteinID:OQU76250.1	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF88	EnsemblPlantsGene:SORBI_3010G119200	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0009DC8DB4	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:13479447..13480369

Molecular Weight (calculated)

27386.2 Da

IEP (calculated)

7.062

GRAVY (calculated)

-0.403

Length

261 amino acids

Sequence
(BLAST)

001: MNPQSPKTSA PCTLPVEPAA AVVPNEAVAT DKAPPPPTAN TVIIREQDRL MPVANVSRIM RQVLPPYAKI SDDAKEVIQE CVSEFISFVT GEANERCHTE
101: RRKTVASEDI VWALNRLGFD DYVAPVGTFL QRMRESEAGG EERGPGRGGG SRRGSSVVTL TLPVNGGAQL TMHHPAAVSR HPHQGVSPAA GYAVRPVPRP
201: AAVPSANGAM YGGNHRPVVP CYHGGGGAAF VDAGGSQHVG FHDDEASSST ENPPAGRPGS H

Best Arabidopsis Sequence Match ( AT1G21970.1 )
(BLAST)

001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK

Arabidopsis Description

NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.