Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g065580.1.1 | Tomato | nucleus | 78.03 | 75.84 |
| Solyc07g065570.1.1 | Tomato | nucleus | 79.19 | 72.87 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 26.01 | 37.5 |
| PGSC0003DMT400079574 | Potato | cytosol | 24.28 | 31.11 |
| PGSC0003DMT400058414 | Potato | nucleus | 23.12 | 29.41 |
| PGSC0003DMT400029608 | Potato | nucleus | 23.7 | 28.67 |
| PGSC0003DMT400082465 | Potato | nucleus | 20.81 | 27.27 |
| PGSC0003DMT400063671 | Potato | nucleus | 21.39 | 26.81 |
| PGSC0003DMT400004366 | Potato | nucleus | 21.39 | 26.43 |
| PGSC0003DMT400035117 | Potato | nucleus | 27.17 | 26.26 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 9.83 | 25.76 |
| PGSC0003DMT400057066 | Potato | nucleus | 24.86 | 23.24 |
| TraesCS7A01G214800.1 | Wheat | cytosol | 26.59 | 22.22 |
| PGSC0003DMT400043176 | Potato | nucleus | 25.43 | 22.22 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 25.43 | 22.22 |
| PGSC0003DMT400095009 | Potato | nucleus | 24.28 | 21.99 |
| PGSC0003DMT400037958 | Potato | nucleus | 22.54 | 21.91 |
| PGSC0003DMT400035119 | Potato | nucleus | 20.23 | 21.74 |
| PGSC0003DMT400035125 | Potato | cytosol | 23.7 | 21.69 |
| KRH70381 | Soybean | cytosol | 27.17 | 20.8 |
| Os06t0285200-01 | Rice | nucleus | 29.48 | 20.4 |
| PGSC0003DMT400035028 | Potato | nucleus | 14.45 | 20.33 |
| PGSC0003DMT400010977 | Potato | nucleus | 23.12 | 19.7 |
| TraesCS7A01G214900.1 | Wheat | nucleus | 30.06 | 19.55 |
| TraesCS7A01G214700.1 | Wheat | nucleus | 30.64 | 19.34 |
| Zm00001d045772_P001 | Maize | nucleus, plastid | 28.9 | 19.08 |
| TraesCS7B01G121900.1 | Wheat | nucleus | 30.64 | 18.93 |
| TraesCS7A01G214600.1 | Wheat | nucleus | 28.32 | 18.42 |
| PGSC0003DMT400035129 | Potato | nucleus | 23.7 | 18.3 |
| TraesCS7D01G216600.1 | Wheat | nucleus | 30.64 | 18.09 |
| OQU76250 | Sorghum | nucleus | 27.17 | 18.01 |
| TraesCS7A01G214500.1 | Wheat | nucleus | 30.64 | 17.79 |
| HORVU7Hr1G043520.1 | Barley | nucleus | 32.37 | 17.55 |
| TraesCS7D01G216800.1 | Wheat | nucleus | 29.48 | 17.17 |
| TraesCS7B01G121800.1 | Wheat | nucleus | 29.48 | 17.0 |
| PGSC0003DMT400035121 | Potato | nucleus | 14.45 | 16.23 |
| PGSC0003DMT400059368 | Potato | cytosol | 12.72 | 14.19 |
| KRH49798 | Soybean | cytosol, golgi, nucleus | 18.5 | 13.85 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 10.98 | 12.03 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 10.98 | 11.95 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | UniProt:M1C0X7 | PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400022277 | PGSC:PGSC0003DMG400022277 | EnsemblPlants:PGSC0003DMT400057379 |
| PRINTS:PR00615 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | SUPFAM:SSF47113 | UniParc:UPI000295602F | SEG:seg |
Description
LEC1 transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022277]
Coordinates
chr7:+:55543376..55543979
Molecular Weight (calculated)
19499.3 Da
IEP (calculated)
9.599
GRAVY (calculated)
-0.461
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MANVTRIMRG ILPTNAKIND GSKESVQKLG SYYINRITKK AKERCNKEQR KTVTAEDILW AMNKMGLTNH AGLLAQYLNR YREYNQVSYF NVRKPNCELT
101: FASLAAPHPI LPIEPIPGYP YPYFPPNVLF YDPVTAALVT SRDFEMAVGN DGSPSESSSS TVAPAYPFGQ WRQ
101: FASLAAPHPI LPIEPIPGYP YPYFPPNVLF YDPVTAALVT SRDFEMAVGN DGSPSESSSS TVAPAYPFGQ WRQ
001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.