Factsheet for PGSC0003DMT400079574

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005440.1.1	Tomato	cytosol	78.52	50.96
PGSC0003DMT400034611	Potato	mitochondrion	44.44	50.0
PGSC0003DMT400035119	Potato	nucleus	53.33	44.72
PGSC0003DMT400035028	Potato	nucleus	35.56	39.02
PGSC0003DMT400084724	Potato	endoplasmic reticulum, extracellular	54.81	37.37
PGSC0003DMT400035125	Potato	cytosol	51.85	37.04
PGSC0003DMT400035117	Potato	nucleus	47.41	35.75
VIT_00s0956g00020.t01	Wine grape	nucleus	52.59	33.65
PGSC0003DMT400035193	Potato	cytosol, extracellular, nucleus	16.3	33.33
PGSC0003DMT400058414	Potato	nucleus	33.33	33.09
PGSC0003DMT400035129	Potato	nucleus	51.85	31.25
PGSC0003DMT400029608	Potato	nucleus	32.59	30.77
KRH01950	Soybean	nucleus	51.11	30.53
KRH51197	Soybean	nucleus	50.37	30.49
PGSC0003DMT400082465	Potato	nucleus	29.63	30.3
PGSC0003DMT400004366	Potato	nucleus	31.11	30.0
PGSC0003DMT400035121	Potato	nucleus	34.07	29.87
CDY41063	Canola	nucleus	45.93	29.67
CDY25952	Canola	nucleus	45.19	29.47
GSMUA_Achr3P04310_001	Banana	nucleus	45.93	29.25
Bra017471.1-P	Field mustard	nucleus	45.19	29.19
CDY17715	Canola	nucleus	47.41	27.71
Bra024924.1-P	Field mustard	nucleus	47.41	27.71
AT5G47670.3	Thale cress	nucleus	47.41	27.35
PGSC0003DMT400063671	Potato	nucleus	26.67	26.09
PGSC0003DMT400095009	Potato	nucleus	36.3	25.65
PGSC0003DMT400057066	Potato	nucleus	34.07	24.86
PGSC0003DMT400057379	Potato	nucleus	31.11	24.28
PGSC0003DMT400037958	Potato	nucleus	31.11	23.6
PGSC0003DMT400010977	Potato	nucleus	34.07	22.66
PGSC0003DMT400043176	Potato	nucleus	30.37	20.71
PGSC0003DMT400059368	Potato	cytosol	20.74	18.06
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	19.26	16.46
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	19.26	16.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400079574	EnsemblPlantsGene:PGSC0003DMG400030986	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:CBFA_NFYB_domain
InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR11064	PANTHER:PTHR11064:SF20	PFAM:PF00808	PGSC:PGSC0003DMG400030986
PRINTS:PR00615	SUPFAM:SSF47113	UniParc:UPI000295D937	UniProt:M1D230	MapMan:15.5.51.2	:

Description

Leafy cotyledon 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030986]

Coordinates

chr5:+:8408839..8409246

Molecular Weight (calculated)

15020.6 Da

IEP (calculated)

5.223

GRAVY (calculated)

-0.530

Length

135 amino acids

Sequence
(BLAST)

001: MHKILPPHAK ISDGSKLITQ ECVSEFIGFI TGEANDCCQR DQRNTITAED VLCAMDRFGF DDYVGTLALY LHRYREYDGG RGSTRREPLL LRRSMVNPAS
101: VYSITPYQGD ASNGNTSQGD AVDIKVESPV KEAKE

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.