Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41063 | Canola | nucleus | 96.65 | 96.65 |
| CDY25952 | Canola | nucleus | 92.34 | 93.24 |
| Bra024924.1-P | Field mustard | nucleus | 83.73 | 75.76 |
| AT5G47670.3 | Thale cress | nucleus | 82.78 | 73.93 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 37.8 | 65.83 |
| Solyc11g012750.1.1 | Tomato | nucleus | 44.98 | 61.84 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 55.02 | 54.5 |
| KRH51197 | Soybean | nucleus | 53.59 | 50.22 |
| KRH01950 | Soybean | nucleus | 53.59 | 49.56 |
| PGSC0003DMT400035117 | Potato | nucleus | 41.63 | 48.6 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 15.31 | 48.48 |
| Bra012301.1-P | Field mustard | nucleus | 45.45 | 47.5 |
| Bra005074.1-P | Field mustard | nucleus | 31.1 | 45.77 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 46.41 | 45.75 |
| Bra031356.1-P | Field mustard | nucleus | 46.41 | 45.33 |
| Bra021147.1-P | Field mustard | nucleus | 33.97 | 45.22 |
| PGSC0003DMT400079574 | Potato | cytosol | 29.19 | 45.19 |
| Solyc04g015060.1.1 | Tomato | nucleus | 50.24 | 44.3 |
| Bra018585.1-P | Field mustard | nucleus | 26.79 | 42.42 |
| Bra000462.1-P | Field mustard | nucleus | 31.58 | 42.31 |
| Bra017473.1-P | Field mustard | nucleus | 36.84 | 41.85 |
| Bra027199.1-P | Field mustard | nucleus | 33.97 | 41.76 |
| Bra022147.1-P | Field mustard | nucleus | 36.84 | 41.4 |
| Bra006991.1-P | Field mustard | nucleus | 34.45 | 40.45 |
| Bra004428.1-P | Field mustard | nucleus | 29.67 | 40.0 |
| Bra001615.1-P | Field mustard | nucleus | 35.89 | 39.68 |
| Bra017209.1-P | Field mustard | nucleus | 35.89 | 39.27 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 36.36 | 38.38 |
| PGSC0003DMT400035125 | Potato | cytosol | 33.97 | 37.57 |
| Solyc05g005440.1.1 | Tomato | cytosol | 36.84 | 37.02 |
| Bra023095.1-P | Field mustard | nucleus | 35.41 | 37.0 |
| PGSC0003DMT400035119 | Potato | nucleus | 27.75 | 36.02 |
| PGSC0003DMT400035129 | Potato | nucleus | 36.84 | 34.38 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 34.93 | 33.33 |
| Bra013143.1-P | Field mustard | nucleus | 32.54 | 32.54 |
| Bra037211.1-P | Field mustard | nucleus | 31.58 | 31.73 |
| PGSC0003DMT400035028 | Potato | nucleus | 18.66 | 31.71 |
| Solyc05g005360.1.1 | Tomato | nucleus | 33.49 | 31.25 |
| Solyc05g005350.1.1 | Tomato | nucleus | 32.54 | 31.05 |
| Solyc05g005370.1.1 | Tomato | nucleus | 33.01 | 30.8 |
| Bra016397.1-P | Field mustard | cytosol | 26.79 | 29.17 |
| PGSC0003DMT400035121 | Potato | nucleus | 20.1 | 27.27 |
| Solyc05g005380.1.1 | Tomato | plastid | 44.98 | 26.33 |
| Bra009328.1-P | Field mustard | cytosol, nucleus, plastid | 17.7 | 22.29 |
| Bra005976.1-P | Field mustard | cytosol, nucleus, plastid | 16.27 | 22.22 |
| Bra035959.1-P | Field mustard | cytosol, nucleus, plastid | 17.7 | 22.02 |
| Solyc05g005340.2.1 | Tomato | extracellular | 12.44 | 20.97 |
| Solyc02g032180.1.1 | Tomato | nucleus | 20.57 | 14.98 |
| Bra028668.1-P | Field mustard | nucleus | 12.92 | 14.06 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EnsemblPlantsGene:Bra017471 | EnsemblPlants:Bra017471.1 | EnsemblPlants:Bra017471.1-P | InterPro:CBFA_NFYB_domain |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M4DLU0 | PFAM:PF00808 |
| PRINTS:PR00615 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF79 | SUPFAM:SSF47113 | UniParc:UPI00025423C6 | : |
Description
AT5G47670 (E=2e-095) NF-YB6 | NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6); transcription activator/ transcription activator binding / transcription factor
Coordinates
chrA09:-:15653679..15654444
Molecular Weight (calculated)
23282.5 Da
IEP (calculated)
6.129
GRAVY (calculated)
-0.709
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MERGGFHGYG KFSLNNTTNP GKLLMAESGM QLPEPNQPTK TANGGQEECT VREQDRVMPI ANVIRIMRRI LPANAKISDD SKETIQECVS EYIGFETGEA
101: NERCQREQRK TITAEDVLWA MSKLGFDDYI EPLTLYLHRY RELEGDRGVN CGVGSVSMTN GMVVKRPNGT MAEYGPYGTM APYRYHHQNG FAYSGNDPNS
201: KMGGSSSSF
101: NERCQREQRK TITAEDVLWA MSKLGFDDYI EPLTLYLHRY RELEGDRGVN CGVGSVSMTN GMVVKRPNGT MAEYGPYGTM APYRYHHQNG FAYSGNDPNS
201: KMGGSSSSF
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.