Factsheet for Bra016397.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38832	Canola	nucleus	66.15	55.46
Bra012301.1-P	Field mustard	nucleus	39.06	37.5
Bra005074.1-P	Field mustard	nucleus	27.6	37.32
Bra021147.1-P	Field mustard	nucleus	30.21	36.94
Bra027199.1-P	Field mustard	nucleus	30.73	34.71
Bra031356.1-P	Field mustard	nucleus	38.54	34.58
Bra018585.1-P	Field mustard	nucleus	23.44	34.09
Bra000462.1-P	Field mustard	nucleus	27.08	33.33
Bra017473.1-P	Field mustard	nucleus	30.73	32.07
Bra022147.1-P	Field mustard	nucleus	30.73	31.72
Bra004428.1-P	Field mustard	nucleus	25.52	31.61
Bra001615.1-P	Field mustard	nucleus	30.21	30.69
Bra006991.1-P	Field mustard	nucleus	28.12	30.34
Bra017209.1-P	Field mustard	nucleus	27.6	27.75
Bra023095.1-P	Field mustard	nucleus	28.12	27.0
Bra017471.1-P	Field mustard	nucleus	29.17	26.79
Bra024924.1-P	Field mustard	nucleus	31.25	25.97
TraesCS6B01G316700.1	Wheat	cytosol, nucleus, plastid	21.88	25.77
TraesCS6D01G268100.1	Wheat	cytosol, nucleus, plastid	21.35	25.15
Bra013143.1-P	Field mustard	nucleus	27.08	24.88
Bra037211.1-P	Field mustard	nucleus	26.04	24.04
TraesCS6A01G287400.2	Wheat	cytosol, mitochondrion, nucleus, plastid	20.83	23.39
Os02t0725900-01	Rice	nucleus	20.83	21.51
HORVU6Hr1G072140.1	Barley	cytosol	17.71	20.86
EES05602	Sorghum	nucleus	19.79	19.29
Zm00001d017899_P001	Maize	nucleus	19.79	19.29
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	16.67	19.28
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	16.15	18.45
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	14.06	17.65
Bra028668.1-P	Field mustard	nucleus	10.94	10.94

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra016397	EnsemblPlants:Bra016397.1	EnsemblPlants:Bra016397.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4DIS0	PFAM:PF00808
PRINTS:PR00615	PANTHER:PTHR11064	PANTHER:PTHR11064:SF79	SUPFAM:SSF47113	UniParc:UPI00025467A5	SEG:seg

Description

AT1G21970 (E=4e-035) LEC1, EMB 212, EMB212, NF-YB9 | LEC1 (LEAFY COTYLEDON 1); transcription activator/ transcription factor

Coordinates

chrA08:+:18262045..18262623

Molecular Weight (calculated)

21281.6 Da

IEP (calculated)

5.578

GRAVY (calculated)

-0.092

Length

192 amino acids

Sequence
(BLAST)

001: MPPEQDQYLP IASVTRIMRK ILPSEARISE EAKENILICA TKYISFVTTE ASDTCQSERR TTITAGDMLS AMSNLGFEDY VEPLNVFINR YRLSETDRGC
101: SLRGGSSSFD PAYGGSGIGF HGPPHYGPPP HGTIPYGPLP HVPPPPGPMV TVCWISLWIW VVVIGTTQTG RVRMELLVVV DLHQFYEWNA VL

Best Arabidopsis Sequence Match ( AT1G21970.1 )
(BLAST)

001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK

Arabidopsis Description

NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.