Factsheet for Bra009328.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69967	Canola	cytosol, nucleus, plastid	99.4	100.0
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	86.14	93.46
AT5G08190.1	Thale cress	cytosol, nucleus, plastid	90.96	92.64
KRH56716	Soybean	cytosol, mitochondrion, nucleus	79.52	84.08
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	84.94	83.93
KRH03842	Soybean	cytosol, mitochondrion, nucleus	79.52	82.5
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	77.71	81.65
GSMUA_Achr1P20700_001	Banana	cytosol	25.9	81.13
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	75.3	80.65
KRH54787	Soybean	cytosol, mitochondrion, nucleus	74.7	79.49
Solyc06g069310.2.1	Tomato	cytosol, mitochondrion, nucleus	62.65	79.39
PGSC0003DMT400059368	Potato	cytosol	74.1	79.35
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	75.3	78.62
Solyc03g114400.2.1	Tomato	cytosol, nucleus, plastid	59.64	75.0
KRH62965	Soybean	cytosol, nucleus	48.19	74.77
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	51.2	72.03
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	68.67	65.9
Bra028668.1-P	Field mustard	nucleus	57.23	49.48
TraesCS3A01G450700.1	Wheat	cytosol, mitochondrion, nucleus	68.07	38.83
Zm00001d050242_P002	Maize	plastid	69.28	38.72
EES13767	Sorghum	nucleus	69.28	38.72
Zm00001d032328_P005	Maize	extracellular, plastid	69.28	38.21
TraesCS3B01G487800.1	Wheat	cytosol, mitochondrion, nucleus	68.07	38.18
TraesCS3D01G443500.1	Wheat	cytosol, mitochondrion, nucleus	68.07	37.92
HORVU3Hr1G097680.4	Barley	cytosol, mitochondrion, nucleus	65.66	35.5
Bra005074.1-P	Field mustard	nucleus	23.49	27.46
Bra021147.1-P	Field mustard	nucleus	22.29	23.57
Bra018585.1-P	Field mustard	nucleus	18.67	23.48
Bra017473.1-P	Field mustard	nucleus	25.3	22.83
Bra022147.1-P	Field mustard	nucleus	25.3	22.58
Bra006991.1-P	Field mustard	nucleus	24.1	22.47
Bra027199.1-P	Field mustard	nucleus	22.29	21.76
Bra001615.1-P	Field mustard	nucleus	24.1	21.16
Os08t0383700-02	Rice	cytosol, extracellular	31.33	20.97
Bra017209.1-P	Field mustard	nucleus	24.1	20.94
Bra000462.1-P	Field mustard	nucleus	19.28	20.51
Bra023095.1-P	Field mustard	nucleus	24.1	20.0
Bra004428.1-P	Field mustard	nucleus	18.67	20.0
Bra017471.1-P	Field mustard	nucleus	22.29	17.7
Bra013143.1-P	Field mustard	nucleus	22.29	17.7
Bra012301.1-P	Field mustard	nucleus	20.48	17.0
Bra016397.1-P	Field mustard	cytosol	19.28	16.67
Bra024924.1-P	Field mustard	nucleus	22.89	16.45
Bra031356.1-P	Field mustard	nucleus	21.08	16.36
Bra037211.1-P	Field mustard	nucleus	20.48	16.35

Protein Annotations

EnsemblPlants:Bra009328.1	EnsemblPlants:Bra009328.1-P	EnsemblPlantsGene:Bra009328	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR11064	PANTHER:PTHR11064:SF8	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI0002543D4B	UniProt:M4CYN1	MapMan:15.3.5.7.1.2	:

Description

AT5G08190 (E=2e-058) NF-YB12 | NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12); DNA binding / transcription factor

Coordinates

chrA10:+:16193122..16193884

Molecular Weight (calculated)

18486.8 Da

IEP (calculated)

4.284

GRAVY (calculated)

-0.623

Length

166 amino acids

Sequence
(BLAST)

001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHRY
101: ETMQDSQRSV KMNSGAEMTE EEAAAEQQRM FAEARARMNG GGGGVSVPQP DPEQQVDTQQ QSNLQS

Best Arabidopsis Sequence Match ( AT5G08190.1 )
(BLAST)

001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY
101: ETMQDSQRSV KMNSGAEMTE EEAAAEQQRM FAEARARMNG GVTVPQPEQL EEPQQQQQTS LQS

Arabidopsis Description

NF-YB12NF-YB12 [Source:UniProtKB/TrEMBL;Acc:A0A178UHP2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.