Factsheet for Bra017473.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41061	Canola	nucleus	100.0	100.0
CDY25955	Canola	nucleus	98.91	97.33
AT5G47640.1	Thale cress	nucleus	92.93	90.0
Bra022147.1-P	Field mustard	nucleus	89.67	88.71
Bra021147.1-P	Field mustard	nucleus	59.78	70.06
Bra027199.1-P	Field mustard	nucleus	59.24	64.12
Bra005074.1-P	Field mustard	nucleus	47.28	61.27
Bra001615.1-P	Field mustard	nucleus	58.7	57.14
Bra006991.1-P	Field mustard	nucleus	52.72	54.49
Bra017209.1-P	Field mustard	nucleus	51.63	49.74
Bra000462.1-P	Field mustard	nucleus	41.85	49.36
Bra023095.1-P	Field mustard	nucleus	52.72	48.5
Bra018585.1-P	Field mustard	nucleus	34.78	48.48
Bra004428.1-P	Field mustard	nucleus	39.67	47.1
Bra013143.1-P	Field mustard	nucleus	49.46	43.54
Bra037211.1-P	Field mustard	nucleus	47.83	42.31
Bra017471.1-P	Field mustard	nucleus	41.85	36.84
Bra012301.1-P	Field mustard	nucleus	39.13	36.0
Bra024924.1-P	Field mustard	nucleus	41.85	33.33
Bra031356.1-P	Field mustard	nucleus	37.5	32.24
Bra016397.1-P	Field mustard	cytosol	32.07	30.73
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	22.83	25.3
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	20.11	24.18
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	21.74	23.81
Bra028668.1-P	Field mustard	nucleus	15.76	15.1

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra017473	EnsemblPlants:Bra017473.1	EnsemblPlants:Bra017473.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4DLU2	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF87	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00025423C8	SEG:seg	:

Description

AT5G47640 (E=3e-065) NF-YB2 | NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2); transcription factor

Coordinates

chrA09:-:15658186..15658740

Molecular Weight (calculated)

19885.0 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.962

Length

184 amino acids

Sequence
(BLAST)

001: MGDSDRDSGG GQTGNNQNGQ SSLSPREQDR FLPIANVSRI MKKALPANAK ISKDAKETMQ ECVSEFISFV TGEASDKCQK EKRKTINGDD LLWAMTTLGF
101: EDYVEPLKVY LQRFREIEGE RTGLGRPQTG GEAGEHQRDG DGGGGYYGGG MGMGYQQHHQ FLQQQNHMYG STGGGGGGHS GGRS

Best Arabidopsis Sequence Match ( AT5G47640.1 )
(BLAST)

001: MGDSDRDSGG GQNGNNQNGQ SSLSPREQDR FLPIANVSRI MKKALPANAK ISKDAKETMQ ECVSEFISFV TGEASDKCQK EKRKTINGDD LLWAMTTLGF
101: EDYVEPLKVY LQRFREIEGE RTGLGRPQTG GEVGEHQRDA VGDGGGFYGG GGGMQYHQHH QFLHQQNHMY GATGGGSDSG GGAASGRTRT

Arabidopsis Description

NFYB2Nuclear transcription factor Y subunit B-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.