Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017473.1-P | Field mustard | nucleus | 97.33 | 98.91 |
| CDY41061 | Canola | nucleus | 97.33 | 98.91 |
| AT5G47640.1 | Thale cress | nucleus | 93.05 | 91.58 |
| CDY28916 | Canola | nucleus | 89.3 | 89.78 |
| CDY40552 | Canola | nucleus | 87.7 | 88.65 |
| CDY21888 | Canola | nucleus | 59.36 | 70.7 |
| CDY20167 | Canola | nucleus | 59.36 | 70.25 |
| CDY30123 | Canola | nucleus | 59.36 | 67.27 |
| CDX74880 | Canola | nucleus | 46.52 | 61.27 |
| CDX75855 | Canola | nucleus | 60.43 | 60.75 |
| CDX82424 | Canola | nucleus | 60.96 | 60.32 |
| CDX77785 | Canola | cytosol | 40.64 | 56.72 |
| CDY18462 | Canola | nucleus | 51.34 | 54.86 |
| CDY07691 | Canola | nucleus | 46.52 | 52.41 |
| CDY14422 | Canola | nucleus | 44.38 | 50.61 |
| CDY72254 | Canola | nucleus | 50.27 | 50.54 |
| CDX83320 | Canola | nucleus | 41.71 | 50.0 |
| CDY53021 | Canola | nucleus | 41.18 | 49.68 |
| CDY18460 | Canola | nucleus | 51.34 | 49.48 |
| CDX95014 | Canola | nucleus | 34.22 | 48.48 |
| CDX80136 | Canola | nucleus | 41.18 | 44.77 |
| CDX89608 | Canola | nucleus | 48.66 | 43.54 |
| CDX93117 | Canola | nucleus | 48.66 | 43.54 |
| CDX79714 | Canola | nucleus | 51.34 | 43.24 |
| CDX73560 | Canola | nucleus | 52.41 | 42.79 |
| CDY37212 | Canola | nucleus | 47.06 | 42.31 |
| CDX81449 | Canola | nucleus | 46.52 | 41.83 |
| CDX91501 | Canola | nucleus | 47.06 | 41.51 |
| CDY41063 | Canola | nucleus | 42.78 | 38.28 |
| CDY25952 | Canola | nucleus | 42.25 | 38.16 |
| CDX78169 | Canola | nucleus | 52.41 | 38.13 |
| CDY46752 | Canola | nucleus | 52.41 | 36.7 |
| CDY17715 | Canola | nucleus | 41.71 | 33.77 |
| CDY00411 | Canola | nucleus | 40.11 | 32.61 |
| CDY01304 | Canola | nucleus | 40.11 | 32.47 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 22.46 | 25.45 |
| CDY38832 | Canola | nucleus | 31.02 | 25.33 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 22.46 | 25.3 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 21.39 | 23.67 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 21.39 | 23.67 |
| CDY68650 | Canola | nucleus | 37.43 | 23.33 |
| CDY30639 | Canola | nucleus | 38.5 | 21.05 |
| CDY44761 | Canola | cytosol | 21.93 | 17.08 |
| CDY40760 | Canola | nucleus | 21.39 | 16.13 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | ProteinID:AHI94917.1 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY25955 | ProteinID:CDY25955 |
| ProteinID:CDY25955.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 |
| EnsemblPlantsGene:GSBRNA2T00033465001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF87 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0003EFC55A | GO:W6DGI7 |
| UniProt:W6DGI7 | SEG:seg | : | : | : | : |
Description
BnaC09g20320DBnaC09g20320D protein [Source:UniProtKB/TrEMBL;Acc:W6DGI7]
Coordinates
chrLK032183:-:289387..290069
Molecular Weight (calculated)
20178.4 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.943
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSDRDSGG GQTGNNQNGQ SSLSPREQDR FLPIANVSRI MKKALPANAK ISKDAKETMQ ECVSEFISFV TGEASDKCQK EKRKTINGDD LLWAMTTLGF
101: EDYVEPLKVY LQRFREIEGE RTGLGRPQTG GEAGEHQRDG GVGDGGGGYY GGGMGMQYQQ HHQFLHQQNH MYGSTGGGGG GHSGGRS
101: EDYVEPLKVY LQRFREIEGE RTGLGRPQTG GEAGEHQRDG GVGDGGGGYY GGGMGMQYQQ HHQFLHQQNH MYGSTGGGGG GHSGGRS
001: MGDSDRDSGG GQNGNNQNGQ SSLSPREQDR FLPIANVSRI MKKALPANAK ISKDAKETMQ ECVSEFISFV TGEASDKCQK EKRKTINGDD LLWAMTTLGF
101: EDYVEPLKVY LQRFREIEGE RTGLGRPQTG GEVGEHQRDA VGDGGGFYGG GGGMQYHQHH QFLHQQNHMY GATGGGSDSG GGAASGRTRT
101: EDYVEPLKVY LQRFREIEGE RTGLGRPQTG GEVGEHQRDA VGDGGGFYGG GGGMQYHQHH QFLHQQNHMY GATGGGSDSG GGAASGRTRT
Arabidopsis Description
NFYB2Nuclear transcription factor Y subunit B-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.