Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21970.1 | CDX69494 | AT5G15840.1 | 17138697 |
| AT1G21970.1 | CDY26469 | AT5G15840.1 | 17138697 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012301.1-P | Field mustard | nucleus | 86.15 | 99.5 |
| CDY00411 | Canola | nucleus | 98.27 | 98.7 |
| AT1G21970.1 | Thale cress | nucleus | 78.79 | 76.47 |
| CDY68650 | Canola | nucleus | 76.19 | 58.67 |
| CDY30639 | Canola | nucleus | 84.85 | 57.31 |
| KRG89094 | Soybean | cytosol | 38.96 | 53.57 |
| KRH66068 | Soybean | nucleus | 39.83 | 52.87 |
| CDY41063 | Canola | nucleus | 44.16 | 48.8 |
| CDY25952 | Canola | nucleus | 43.72 | 48.79 |
| CDX74880 | Canola | nucleus | 28.57 | 46.48 |
| CDY17715 | Canola | nucleus | 45.45 | 45.45 |
| CDY21888 | Canola | nucleus | 30.74 | 45.22 |
| CDY20167 | Canola | nucleus | 30.74 | 44.94 |
| CDY30123 | Canola | nucleus | 31.17 | 43.64 |
| CDX83320 | Canola | nucleus | 28.57 | 42.31 |
| CDX95014 | Canola | nucleus | 23.81 | 41.67 |
| CDY40552 | Canola | nucleus | 33.33 | 41.62 |
| CDY28916 | Canola | nucleus | 33.33 | 41.4 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 42.86 | 40.91 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 43.29 | 40.65 |
| TraesCS6D01G268000.1 | Wheat | nucleus | 43.29 | 40.65 |
| TraesCS6B01G316600.1 | Wheat | nucleus | 43.29 | 40.65 |
| Os02t0725700-01 | Rice | nucleus | 44.59 | 40.55 |
| Zm00001d051697_P001 | Maize | nucleus | 46.32 | 40.53 |
| CDY41061 | Canola | nucleus | 32.03 | 40.22 |
| CDY25955 | Canola | nucleus | 32.47 | 40.11 |
| CDY53021 | Canola | nucleus | 26.84 | 40.0 |
| CDY07691 | Canola | nucleus | 28.57 | 39.76 |
| CDX75855 | Canola | nucleus | 31.6 | 39.25 |
| CDX82424 | Canola | nucleus | 31.6 | 38.62 |
| Zm00001d017898_P001 | Maize | nucleus | 46.32 | 38.49 |
| KXG30848 | Sorghum | nucleus | 45.89 | 38.41 |
| CDY38832 | Canola | nucleus | 37.66 | 37.99 |
| CDY14422 | Canola | nucleus | 26.84 | 37.8 |
| CDY18462 | Canola | nucleus | 28.57 | 37.71 |
| CDX80136 | Canola | nucleus | 27.27 | 36.63 |
| CDY72254 | Canola | nucleus | 28.14 | 34.95 |
| CDY18460 | Canola | nucleus | 29.0 | 34.54 |
| CDX93117 | Canola | nucleus | 30.74 | 33.97 |
| CDX89608 | Canola | nucleus | 30.74 | 33.97 |
| CDY37212 | Canola | nucleus | 29.44 | 32.69 |
| CDX81449 | Canola | nucleus | 29.0 | 32.21 |
| CDX91501 | Canola | nucleus | 29.44 | 32.08 |
| CDX79714 | Canola | nucleus | 29.44 | 30.63 |
| CDX77785 | Canola | cytosol | 17.75 | 30.6 |
| CDX73560 | Canola | nucleus | 29.87 | 30.13 |
| CDX78169 | Canola | nucleus | 29.87 | 26.85 |
| CDY46752 | Canola | nucleus | 29.87 | 25.84 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 16.02 | 21.89 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 16.02 | 21.89 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 15.58 | 21.69 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 15.15 | 21.21 |
| CDY44761 | Canola | cytosol | 14.72 | 14.17 |
| CDY40760 | Canola | nucleus | 14.29 | 13.31 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | ProteinID:ACB12186.1 | GO:B5L584 | UniProt:B5L584 | unigene:Bna.3334 |
| InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY01304 | ProteinID:CDY01304 | ProteinID:CDY01304.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00112245001 | InterPro:Histone-fold | InterPro:IPR009072 |
| PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF79 | SUPFAM:SSF47113 |
| InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI00017F9A03 | SEG:seg | : | : | : |
Description
BnaA07g10770DLeafy cotyledon 1 transcription factor [Source:UniProtKB/TrEMBL;Acc:B5L584]
Coordinates
chrLK031926:+:64552..66617
Molecular Weight (calculated)
25382.9 Da
IEP (calculated)
6.352
GRAVY (calculated)
-0.702
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MERGAPLSHY QLPKSNSGLN LDQHNNSIPT MTGSIGACDD KNKTILPQQQ PSMPREQDQY MPIANVIRIM RKILPPHAKI SDDAKETIQE CVSEYISFVT
101: GEANERCQRE QRKTITAEDI LWAMSKLGFD DYVGPLNVFI NRYREFETDR GCSLRGESSF KPVYGGSGMG FHGPPPPGSY GYGMLDQSMV MGGGRYYHNG
201: SGPDGSVGGG GGSSSSMNGM PVNYDQYGQY K
101: GEANERCQRE QRKTITAEDI LWAMSKLGFD DYVGPLNVFI NRYREFETDR GCSLRGESSF KPVYGGSGMG FHGPPPPGSY GYGMLDQSMV MGGGRYYHNG
201: SGPDGSVGGG GGSSSSMNGM PVNYDQYGQY K
001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
Arabidopsis Description
NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.