Factsheet for Zm00001d017898_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30848	Sorghum	nucleus	88.13	88.77
Zm00001d051697_P001	Maize	nucleus	80.22	84.47
TraesCS6A01G287300.1	Wheat	nucleus	62.95	71.14
TraesCS6D01G268000.1	Wheat	nucleus	62.59	70.73
TraesCS6B01G316600.1	Wheat	nucleus	62.23	70.33
Os02t0725700-01	Rice	nucleus	64.03	70.08
HORVU6Hr1G072110.1	Barley	nucleus	60.07	69.01
KRG89094	Soybean	cytosol	33.45	55.36
KRH66068	Soybean	nucleus	34.17	54.6
Bra012301.1-P	Field mustard	nucleus	37.05	51.5
Bra031356.1-P	Field mustard	nucleus	38.13	49.53
Zm00001d001775_P001	Maize	nucleus	16.19	49.45
CDY00411	Canola	nucleus	38.49	46.52
CDY01304	Canola	nucleus	38.49	46.32
AT1G21970.1	Thale cress	nucleus	39.21	45.8
Zm00001d009636_P001	Maize	nucleus	21.22	45.74
Zm00001d039957_P001	Maize	nucleus	20.5	41.3
Zm00001d038397_P005	Maize	nucleus	26.26	41.01
Zm00001d006813_P001	Maize	nucleus	29.14	39.51
Zm00001d022099_P001	Maize	nucleus	29.86	39.15
Zm00001d011915_P001	Maize	nucleus	23.74	38.6
Zm00001d042196_P001	Maize	nucleus	24.82	38.55
Zm00001d010574_P001	Maize	nucleus	25.9	38.5
Zm00001d042968_P002	Maize	extracellular, nucleus	25.18	36.84
Zm00001d029505_P001	Maize	nucleus	29.14	36.49
Zm00001d045772_P001	Maize	nucleus, plastid	34.17	36.26
CDY68650	Canola	nucleus	38.13	35.33
Zm00001d030151_P001	Maize	mitochondrion	9.71	32.93
Zm00001d042197_P001	Maize	plastid	19.06	31.93
CDY30639	Canola	nucleus	39.21	31.87
Zm00001d049485_P001	Maize	nucleus	29.14	31.27
Zm00001d017899_P001	Maize	nucleus	17.99	25.38
Zm00001d019101_P001	Maize	nucleus	16.91	23.86
Zm00001d050242_P002	Maize	plastid	15.83	14.81
Zm00001d032328_P005	Maize	extracellular, plastid	15.11	13.95
Zm00001d012445_P001	Maize	nucleus	25.9	13.64

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:542498	EMBL:AF410176	ProteinID:AQK74481.1	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF20
UniProt:Q94EJ7	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00000A1BD4	EnsemblPlantsGene:Zm00001d017898	EnsemblPlants:Zm00001d017898_P001
EnsemblPlants:Zm00001d017898_T001	SEG:seg	:	:	:	:

Description

LEC1 transcription factor1 LEC1 transcription factor1

Coordinates

chr5:-:209724572..209725408

Molecular Weight (calculated)

29098.9 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.522

Length

278 amino acids

Sequence
(BLAST)

001: MDSSSFLPAA GAENGSAAGG ANNGGAAQQH AAPAIREQDR LMPIANVIRI MRRVLPAHAK ISDDAKETIQ ECVSEYISFI TGEANERCQR EQRKTITAED
101: VLWAMSRLGF DDYVEPLGAY LHRYREFEGD ARGVGLVPGA APSRGGDHHP HSMSPAAMLK SRGPVSGAAM LPHHHHHHDM QMHAAMYGGT AVPPPAGPPH
201: HGGFLMPHPQ GSSHYLPYAY EPTYGGEHAM AAYYGGAAYA PGNGGSGDGS GSGGGGGSAS HTPQGSGGLE HPHPFAYK

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.