Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G022380.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21970.1 | HORVU0Hr1G022380.1 | AT5G15840.1 | 17138697 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G268000.1 | Wheat | nucleus | 95.04 | 93.5 |
| TraesCS6B01G316600.1 | Wheat | nucleus | 95.04 | 93.5 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 95.04 | 93.5 |
| Os02t0725700-01 | Rice | nucleus | 73.97 | 70.47 |
| Zm00001d051697_P001 | Maize | nucleus | 68.18 | 62.5 |
| KXG30848 | Sorghum | nucleus | 69.42 | 60.87 |
| Zm00001d017898_P001 | Maize | nucleus | 69.01 | 60.07 |
| KRG89094 | Soybean | cytosol | 37.6 | 54.17 |
| KRH66068 | Soybean | nucleus | 38.43 | 53.45 |
| Bra012301.1-P | Field mustard | nucleus | 40.08 | 48.5 |
| Bra031356.1-P | Field mustard | nucleus | 42.15 | 47.66 |
| HORVU5Hr1G004870.1 | Barley | nucleus | 21.9 | 45.69 |
| CDY01304 | Canola | nucleus | 40.91 | 42.86 |
| HORVU7Hr1G105460.1 | Barley | nucleus | 30.58 | 42.77 |
| HORVU7Hr1G119940.1 | Barley | nucleus | 22.73 | 42.64 |
| CDY00411 | Canola | nucleus | 40.5 | 42.61 |
| HORVU3Hr1G047250.1 | Barley | nucleus | 23.55 | 41.3 |
| AT1G21970.1 | Thale cress | nucleus | 40.08 | 40.76 |
| HORVU7Hr1G082430.1 | Barley | nucleus | 20.66 | 40.65 |
| HORVU7Hr1G105500.6 | Barley | nucleus | 30.58 | 40.0 |
| HORVU2Hr1G032320.1 | Barley | nucleus | 33.88 | 36.61 |
| HORVU1Hr1G090450.9 | Barley | nucleus | 24.79 | 36.36 |
| HORVU3Hr1G098500.1 | Barley | nucleus | 27.27 | 36.07 |
| CDY68650 | Canola | nucleus | 41.74 | 33.67 |
| HORVU7Hr1G043520.1 | Barley | nucleus | 43.8 | 33.23 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 23.55 | 33.14 |
| CDY30639 | Canola | nucleus | 42.15 | 29.82 |
| HORVU2Hr1G087460.1 | Barley | nucleus | 30.58 | 29.72 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 28.51 | 27.38 |
| HORVU3Hr1G087390.1 | Barley | mitochondrion | 26.03 | 24.42 |
| HORVU6Hr1G072140.1 | Barley | cytosol | 15.7 | 23.31 |
| HORVU3Hr1G097680.4 | Barley | cytosol, mitochondrion, nucleus | 15.29 | 12.05 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | UniProt:A0A287UMS5 | InterPro:CBFA_NFYB_domain | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006629 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009785 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009987 | GO:GO:0010262 | GO:GO:0043565 | GO:GO:0045723 | GO:GO:0045893 | GO:GO:0046982 |
| EnsemblPlantsGene:HORVU6Hr1G072110 | EnsemblPlants:HORVU6Hr1G072110.1 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF86 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000B488472 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:501053954..501055144
Molecular Weight (calculated)
26028.6 Da
IEP (calculated)
6.697
GRAVY (calculated)
-0.637
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMGFHGAAN GTASAAAGNG GGGAQAPPVR EQDRLMPIAN VIRIMRRVLP PHAKISDDAK ETIQECVSEY ISFITGEANE RCQREQRKTI TAEDVLWAMS
101: RLGFDDYVEP LSIYLHRFRE FEGEARGAGV GHHHHGMPPM MLKPRGAPGP MVPHGDMQMH AAGMYGGGAM PHPHHPFHMP PHHGQYPQYE MYGGEHGMAA
201: YYGGAYAPGN SGDGGGSSGN GHGGESTPPA ANFENHQTFG YK
101: RLGFDDYVEP LSIYLHRFRE FEGEARGAGV GHHHHGMPPM MLKPRGAPGP MVPHGDMQMH AAGMYGGGAM PHPHHPFHMP PHHGQYPQYE MYGGEHGMAA
201: YYGGAYAPGN SGDGGGSSGN GHGGESTPPA ANFENHQTFG YK
001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.