Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21970.1 | CDX69494 | AT5G15840.1 | 17138697 |
| AT1G21970.1 | CDY26469 | AT5G15840.1 | 17138697 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031356.1-P | Field mustard | nucleus | 67.0 | 93.93 |
| CDY00411 | Canola | nucleus | 59.0 | 76.96 |
| CDY01304 | Canola | nucleus | 58.67 | 76.19 |
| CDY30639 | Canola | nucleus | 84.33 | 73.98 |
| AT1G21970.1 | Thale cress | nucleus | 53.33 | 67.23 |
| KRG89094 | Soybean | cytosol | 30.67 | 54.76 |
| KRH66068 | Soybean | nucleus | 31.33 | 54.02 |
| CDY41063 | Canola | nucleus | 34.0 | 48.8 |
| CDY25952 | Canola | nucleus | 33.67 | 48.79 |
| CDY17715 | Canola | nucleus | 34.33 | 44.59 |
| CDY20167 | Canola | nucleus | 23.0 | 43.67 |
| CDX74880 | Canola | nucleus | 20.67 | 43.66 |
| CDY21888 | Canola | nucleus | 22.67 | 43.31 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 34.33 | 41.87 |
| TraesCS6B01G316600.1 | Wheat | nucleus | 34.33 | 41.87 |
| TraesCS6D01G268000.1 | Wheat | nucleus | 34.33 | 41.87 |
| CDY30123 | Canola | nucleus | 23.0 | 41.82 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 33.67 | 41.74 |
| CDX83320 | Canola | nucleus | 21.0 | 40.38 |
| CDX95014 | Canola | nucleus | 17.67 | 40.15 |
| Zm00001d051697_P001 | Maize | nucleus | 35.0 | 39.77 |
| Os02t0725700-01 | Rice | nucleus | 33.33 | 39.37 |
| CDY53021 | Canola | nucleus | 20.0 | 38.71 |
| CDY40552 | Canola | nucleus | 23.67 | 38.38 |
| CDY28916 | Canola | nucleus | 23.67 | 38.17 |
| Zm00001d017898_P001 | Maize | nucleus | 35.33 | 38.13 |
| KXG30848 | Sorghum | nucleus | 34.67 | 37.68 |
| CDX75855 | Canola | nucleus | 23.33 | 37.63 |
| CDY41061 | Canola | nucleus | 23.0 | 37.5 |
| CDY25955 | Canola | nucleus | 23.33 | 37.43 |
| CDY07691 | Canola | nucleus | 20.67 | 37.35 |
| CDY18462 | Canola | nucleus | 21.67 | 37.14 |
| CDX82424 | Canola | nucleus | 23.33 | 37.04 |
| CDY38832 | Canola | nucleus | 28.0 | 36.68 |
| CDY14422 | Canola | nucleus | 20.0 | 36.59 |
| CDX80136 | Canola | nucleus | 20.33 | 35.47 |
| CDY72254 | Canola | nucleus | 21.33 | 34.41 |
| CDY18460 | Canola | nucleus | 22.0 | 34.02 |
| CDX89608 | Canola | nucleus | 23.0 | 33.01 |
| CDX93117 | Canola | nucleus | 23.0 | 33.01 |
| CDY37212 | Canola | nucleus | 22.33 | 32.21 |
| CDX81449 | Canola | nucleus | 22.33 | 32.21 |
| CDX91501 | Canola | nucleus | 21.33 | 30.19 |
| CDX73560 | Canola | nucleus | 22.67 | 29.69 |
| CDX79714 | Canola | nucleus | 21.67 | 29.28 |
| CDX77785 | Canola | cytosol | 12.33 | 27.61 |
| CDX78169 | Canola | nucleus | 22.67 | 26.46 |
| CDY46752 | Canola | nucleus | 22.0 | 24.72 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 12.67 | 22.49 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 12.67 | 22.49 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 12.0 | 21.69 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 11.67 | 21.21 |
| CDY44761 | Canola | cytosol | 11.33 | 14.17 |
| CDY40760 | Canola | nucleus | 11.33 | 13.71 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078JQB5 | UniProt:A0A078JQB5 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY68650 |
| ProteinID:CDY68650 | ProteinID:CDY68650.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00076539001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF79 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EDCF0E |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng59920DBnaCnng59920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQB5]
Coordinates
chrLK037723:+:1806..3188
Molecular Weight (calculated)
33183.0 Da
IEP (calculated)
5.370
GRAVY (calculated)
-0.568
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHQNNSIPA AIGNLIACDD KNKSNVEKQQ PCMAREQDQY MPIANVIRIM RRTLPPHAKI SDDAKETIQE CVSEYISFVT GEANERCQRE QRKTITAEDI
101: LWAMSKLGFD DYVGPLNLFI NRYREFESDR GCSLRGESSS FKPAFGGNGF GFHGPPQGPP HPGHYGYGML DQSMVMGGGR YYQNGSGQDG SDGCGGSSSS
201: MNGMPVFDQY DSIPMEERQE LRRLIPRQLV ATVLGLYTIY NEGESGFDLS PDPNTAWGRR FVGLCIGVQH VSSYVFYDGH LQIHCNAGGA GTPAEDKRVV
101: LWAMSKLGFD DYVGPLNLFI NRYREFESDR GCSLRGESSS FKPAFGGNGF GFHGPPQGPP HPGHYGYGML DQSMVMGGGR YYQNGSGQDG SDGCGGSSSS
201: MNGMPVFDQY DSIPMEERQE LRRLIPRQLV ATVLGLYTIY NEGESGFDLS PDPNTAWGRR FVGLCIGVQH VSSYVFYDGH LQIHCNAGGA GTPAEDKRVV
001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
Arabidopsis Description
NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.