Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G37060.2 | Thale cress | nucleus | 68.47 | 87.86 |
| CDY18462 | Canola | nucleus | 68.92 | 87.43 |
| Bra023095.1-P | Field mustard | nucleus | 77.03 | 85.5 |
| CDY72254 | Canola | nucleus | 63.06 | 75.27 |
| CDY18460 | Canola | nucleus | 65.77 | 75.26 |
| PGSC0003DMT400004366 | Potato | nucleus | 47.3 | 75.0 |
| Solyc09g007290.2.1 | Tomato | nucleus | 42.34 | 72.87 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 52.7 | 72.67 |
| CDY46752 | Canola | nucleus | 84.68 | 70.41 |
| CDX74880 | Canola | nucleus | 44.14 | 69.01 |
| Zm00001d038397_P005 | Maize | nucleus | 51.8 | 64.61 |
| KXG22176 | Sorghum | nucleus | 51.8 | 63.89 |
| CDX73560 | Canola | nucleus | 65.77 | 63.76 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 29.73 | 62.26 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 54.05 | 61.86 |
| CDY21888 | Canola | nucleus | 43.24 | 61.15 |
| Os05t0463800-02 | Rice | nucleus | 50.9 | 61.08 |
| CDY20167 | Canola | nucleus | 43.24 | 60.76 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 31.08 | 60.53 |
| Zm00001d010574_P001 | Maize | nucleus | 50.0 | 59.36 |
| CDY07691 | Canola | nucleus | 44.14 | 59.04 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 47.75 | 58.24 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 47.75 | 58.24 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 47.3 | 57.69 |
| CDY30123 | Canola | nucleus | 42.79 | 57.58 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 31.08 | 56.56 |
| CDY14422 | Canola | nucleus | 41.44 | 56.1 |
| CDX78169 | Canola | nucleus | 64.41 | 55.64 |
| CDX75855 | Canola | nucleus | 43.69 | 52.15 |
| CDY41061 | Canola | nucleus | 42.79 | 51.63 |
| CDY25955 | Canola | nucleus | 43.24 | 51.34 |
| CDX82424 | Canola | nucleus | 43.69 | 51.32 |
| CDY40552 | Canola | nucleus | 41.89 | 50.27 |
| CDY28916 | Canola | nucleus | 41.89 | 50.0 |
| CDX91501 | Canola | nucleus | 45.95 | 48.11 |
| CDX95014 | Canola | nucleus | 27.48 | 46.21 |
| CDY53021 | Canola | nucleus | 31.98 | 45.81 |
| CDX83320 | Canola | nucleus | 31.98 | 45.51 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 50.0 | 44.05 |
| CDX93117 | Canola | nucleus | 38.74 | 41.15 |
| CDX89608 | Canola | nucleus | 38.74 | 41.15 |
| CDX77785 | Canola | cytosol | 24.77 | 41.04 |
| CDY37212 | Canola | nucleus | 38.29 | 40.87 |
| CDX80136 | Canola | nucleus | 31.53 | 40.7 |
| CDX81449 | Canola | nucleus | 37.39 | 39.9 |
| CDY25952 | Canola | nucleus | 33.33 | 35.75 |
| CDY41063 | Canola | nucleus | 33.33 | 35.41 |
| CDY17715 | Canola | nucleus | 33.78 | 32.47 |
| CDY00411 | Canola | nucleus | 30.63 | 29.57 |
| CDY01304 | Canola | nucleus | 30.63 | 29.44 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 17.12 | 23.03 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 17.12 | 22.89 |
| CDY38832 | Canola | nucleus | 23.42 | 22.71 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 16.67 | 21.89 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 16.67 | 21.89 |
| CDY68650 | Canola | nucleus | 29.28 | 21.67 |
| CDY30639 | Canola | nucleus | 30.18 | 19.59 |
| CDY44761 | Canola | cytosol | 18.02 | 16.67 |
| CDY40760 | Canola | nucleus | 18.02 | 16.13 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078CUM1 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDX79714 | ProteinID:CDX79714 |
| ProteinID:CDX79714.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 |
| EnsemblPlantsGene:GSBRNA2T00132524001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EF11D3 | SEG:seg |
Description
BnaC03g20500D
Coordinates
chrLK031818:+:1852532..1854395
Molecular Weight (calculated)
24356.9 Da
IEP (calculated)
8.980
GRAVY (calculated)
-0.577
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRQCRCPNA FQISSLQRPI NLSSQHPCFL LQSTPLYFTP APFFRILLLM AESQAKSPGG GESGGDQSPR SSSHVREQDR FLPIANISRI MKRGLPANGK
101: IAKDAKEIVQ ECVSEFISFI TSEASDKCQR EKRKTINGDD LLWAMATLGF EDYIDPLKVY LTRYREGDTK GSAKGGDANA KKGGQSSQNG QFSQLAHQGS
201: FSQGPYGSSQ GQHMMVPMPG TD
101: IAKDAKEIVQ ECVSEFISFI TSEASDKCQR EKRKTINGDD LLWAMATLGF EDYIDPLKVY LTRYREGDTK GSAKGGDANA KKGGQSSQNG QFSQLAHQGS
201: FSQGPYGSSQ GQHMMVPMPG TD
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
Arabidopsis Description
NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.